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Hi,
If a long-running time was okay, what --n-weight, --n-perturb, and --f-perturb would you recommend for the best phasing results?
What is the best way to check phasing quality?
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When differentially assembling two large groups, the current way of individually specifying each `--label-mask-in` and `--label-mask-out` on the command line can lead to the latter complaining about t…
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Thanks for your cool and well-documented work.
I was wondering if there is any output file representing the mapping between nodes in BCALM cdbg (stored in bcalm.unitigs.fa) and your custom format (st…
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Hi I am working on a triploid species which is highly heterozygous, see genomescope plot
http://qb.cshl.edu/genomescope/genomescope2.0/analysis.php?code=nnC4CPmgLE3605rbyM7y
My data is Hifi and …
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Hi all,
I have a view ideas & questions which i would like to discuss with you:
- as a database from which to pull the cells, i would probably create a simple tsv file with cell_id, cell_type, f…
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Greetings, it's possible this might be more of a Bifrost question but I believe you may be well suited to answer this.
It is mentioned that the colours of k-mers contained in a unitig may not nec…
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Hi,
I am new to pyseer and I have some questions about the summarise_annotations script that will help me understand my results better.
In your tutorial you say that this script reports the ma…
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What causes this error?
```
extern/minnow/build/src/minnow simulate --splatter-mode --inputdir ../../analysis/simulation/minnow_splatter/C1/8000-5000-42 -r ../../analysis/simulation/minnow_ind…
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Hi folks,
I attempted to assemble fungal transcriptome using PE and SE reads of which I performed reverse-complement using BBMap reformat.sh. However, I ran into several issues:
1) The assembler…
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Hello,
I need help in understanding what is the information contained in the unitigs.unique_rows_to_all_rows.txt file.
I thought it was a list of unitigs with identical patterns, but for example…