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In the recent SciTech meeting the topic around the family/subgroup -> gene -> allele mapping, relevant to Stats and other analysis was brought up. It would be beneficial for the iR+ groups to share th…
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Hi @Griffan,
Just wondering whether there was precedent to use VB2 on RNA samples, or you can perceive any potential roadblocks?
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## ❓ Questions and Help
We have a set of [listed tutorials available on the website](https://immunarch.com/articles/).
Hi Immunarch team,
I have IMGT output data from bulk BCR-sequencing in the…
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I use hap.py to compare germline variants with engine=vcfeval.
I see some variants line with BD=N.
what's the meaning of "BD=N"? it's seems that variants called in both TRUTH and QUERY.
Thanks!
JY…
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Hi,
We are currently trying to use NEAT-genreads in order to generate realistic WGS/WES tumor and normal samples.
genReadsTumorTutorial is very clear, and we were able to generate both somatic and g…
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Initial notes on proposed scope and definition of these VA type, based on requirements and considerations documented [here](https://docs.google.com/document/d/1J4AqGDEqyK8KAzfiowgHYKJNvzHuwHSHgkN9dleL…
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## Bug Report
### Affected tool(s) or class(es)
Mutect2
### Affected version(s)
Tested in 4.1.2 up to and including 4.1.5
### Description
Here's an IGV screenshot of a variant I found. On…
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There needs to be a validation tool for data sources to ensure that they conform to their formats properly.
This tool is envisioned to be run just prior to data source release to fix any silent error…
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`infer_clonotypes(cdb1, cdb2, cell_pk1, cell_pk2, fine_cluster = TRUE, method = c('union', 'intersect', 'graph-based')) -> ContigCellDB`
1. rbind contigs, with updated cluster info
2. full join of c…
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I've run into an error when attempting to run the Nextflow pipeline, so thought I'd reach out in case it's something you've encountered and can quickly identify what might be causing it. Some of the o…