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https://www.ncbi.nlm.nih.gov/books/NBK21100/ says
> Taxids are indexed with the prefix txid: txid9606 [orgn].
Source organism modifiers are indexed in the [properties] field, and such queries wo…
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Hi! I have read your paper about BERTax. It is wonderful and very inspiring. I'm interested in training a BERTax model for my own application: predict the phylum, class, order, family, genus, and spec…
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Traceback (most recent call last):
File "/home/davidmartins/miniconda3/envs/statistics/bin/kreport2mpa.py", line 173, in
main()
File "/home/davidmartins/miniconda3/envs/statistics/bin/krep…
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I tested the construction of the bacterial index on a Laptop with OS X Sierra and 16 GB RAM. Most of the steps are fine and fit well in the memory, except "CONSTRUCTING SA + KLCP IN PARALLEL". We shou…
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hi
We are running kraken2-build using the docker image staphb/kraken2 on about 30k genomes, we use 75 threads and 120GRAM.
it's been running for 12 days and we see no progress in the logs or any fi…
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In order to use the [OPAL tool](https://github.com/CAMI-challenge/OPAL) for analysis and visualization, it might be useful to convert any supported profiler to [that format](https://github.com/bioboxe…
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Dear authors,
I've been trying to install the MTD software for a few times but I'm always encountering the same issue which is that when creating the new human db the installations just stays tryin…
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It would be nice to have the IDs in the logical order of hierarchy:
TaxonID/GeneID/Homologene/ProteinAccession/ProteinGI/description/FASTA
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Hello, I met some problems when I was running HGT-Finder,it would be very helpful if you could
give me some clues to fix it, thank you in advance!
![image](https://user-images.githubusercontent.com…
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Hi,
some of the terms are not available in the template and hence would like to request for their addition.
Bacteria species
Escherichia coli K-12 W3110 Tax. ID: 316407
Klebsiella pneumoniae A…