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Hello,
I am Lang and want to submit XINA to Bioconductor. I checked XINA by using R CMD Check and Bioccheck and found no warnings and no errors. Of course, I know these are just minimum requireme…
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I have a study with clinical and copy number data (see attached meta file). When I go to patient view of a patient that has copy number profile, the genomic overview never shows up (instead the ajax-l…
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The step `knit report` requires a way too large amount of memory, because the RDS created at `Extract_Signal_Annotation` (https://github.com/BIMSBbioinfo/pigx_chipseq/blob/master/scripts/Extract_Signa…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/ronammar/zFPKM
Confirm the following by editing e…
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https://doi.org/10.1101/151274
> Due to the large numbers of transcription factors (TFs) and cell types, querying binding profiles of all TF/cell type pairs is not experimentally feasible, owing to…
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Following up on our conversation re. jax trials.
Observations:
* It is unusual that all jax trials have harmonized features
* For example, all features on this evidence items have genomic locati…
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https://doi.org/10.1093/bioinformatics/btx243 (previously https://doi.org/10.1101/052118)
> Motivation: Chromatin immune-precipitation sequencing (ChIP-seq) experiments are commonly used to obtain …
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I am currently transferring a pretty large dataset (~11 TB) from a local server to gcs.
Here is an abridged version basic workflow:
```python
# open dataset (about 80 x 133 GB netCDF files)
ds = …
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When I try to run the example data in first step:
`prepare-rpbp-genome c-elegans-test.yaml --overwrite`
I met this error:
subprocess.CalledProcessError: Command 'split-bed12-blocks /home/sun/…
PSSUN updated
6 years ago
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https://doi.org/10.1101/174474
> The Cancer Genome Atlas (TCGA) has profiled over 10,000 tumors across 33 different cancer-types for many genomic features, including gene expression levels. Gene ex…