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VR needs to have a path for representing translocations.
Allele is currently defined as a contiguous sequence change at a single location. Translocations and junctions are unlikely to fit in that m…
reece updated
7 months ago
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Hi
Your ideogram visualization looks very neat. I am looking into visualizations for genetic genealogy purposes. For that reason it would be very useful to color segments from multiple persons, fo…
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Hi bcftools team,
I have a conceptual question about mpileup and I think the -d flag is either being weird or I'm misunderstanding how it works. I am using bcftools v. 1.18, and the .bam file in q…
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Hello,
I am running susieR on a locus and I got the credible set. But I am getting a hard time interpreting the results. What does variable means? is it the row name of the variants list we import…
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Hi, I've come across the problem that oc does not annotate SV vcf's are there plans to support SV in a future or maybe thereis a workaround?
the common line format:
`chr1 964964 20 N 137.6 . SVTYP…
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This might be a misunderstanding on my part, but I would expect that `ad.concat(*ads, merge="first", join="outer")` to populate the alternative axis with first *non-NaN/Null* value it finds. E.g. com…
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**Background**:
[Genome Nexus](https://www.genomenexus.org/) [1] is a tool for the annotation and interpretation of mutations in cancer. [cBioPortal](https://cbioportal.org) leverages Genome Nexus' …
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I am using snakemake 7.25.0 on a slurm cluster. I am trying to use a slurm profile:
```
jobs: 100
use-singularity: True
keep-going: True
rerun-incomplete: True
printshellcmds: True
max-jobs-p…
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Hi,
This is the alignment information for a somatic SV event.
```
Global BP: : 1:1,038,901(-) to 1:1,039,297(+) SPAN 396 c_1_1029001_1054001_367C n001:0 t000:6 ins_aginst_contig 0 del_against_co…