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Hi
Is mmseqs deterministic? When running linclust on a large FASTA file of proteins, one would expect to get very similar clusters when rerunning the same command on the same fasta file (with defau…
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The minimum kmer coverage parameter is used to define a threshold where a kmer is present or absent. Minimizer kmers with coverage less than this threshold are considered absent, and these absent kmer…
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When compiling cuttlefish from source, the included kmc_core seems to have compilation errors due to an incorrect #include.
Specifically, the following errors are generated.
```
In file includ…
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Using 1.1.2 and still get this problem. I have itnerleaved fasta file of 300bp reads, so have to use "-l" option in 1.1.2. Get the same error with any kmer length but 124 bp shown. The program uses al…
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Hi there,
I am following the tutorial using my own batch of genomes (>600 bacterial genome sequences approx 3.5Mb each). For four days now I am stuck at the step:
parallel --results answers -j 8 see…
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I've described the project to a few ppl now, and one question that comes up is as follows:
- There is little dispute that higher order models for predicting TF-DNA binding are more capable than si…
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Hi @cdarby
Thanks for making this tool! I'm having some trouble interpreting the outputs, and I'm hoping you can help.
So I've run the pipeline twice now on two different 3' scRNA-seq PBMC data…
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Hi,
I use 35 hyplotypes to build RPGG for my VNTR sets, I find that the program always reports the following error when I run /soft/danbing-tk-1.1//script/preMBE.py /35Hyplto/genome.bam.tsv pan.tr.mb…
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```
My data is paired-end reads,but when i use the -a -b options,the program said
as follows
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Start at: Thu Nov 18 23:10:33 2010
Load in …
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Hi,
I have built a custom database for kraken2 with default parameters.
When i align 16S nanopore reads with kraken2 I have the following lines in the output file.
![image](https://user-images.gi…