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Hi,
I would love to clean human contaminated sequences from the GTDB bacteria and archaea (r95) and NCBI viruses and fungi, as classifications are being badly affected in some samples of mine with …
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Hi
Thanks for a great tool. Great to be able to process the output files of kraken without knowing all of the TAXIDs and how they are linked together.
Have you considered making extract_kraken_…
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# 本地化nr数据库 - SR-C
数据库下载 nr数据库下载前应确认其序列ID中包含有gi信息。推荐通过NCBI提供的脚本进行下载。 1 perl update_blastdb.pl nr 下载完成后解压 1 tar -zxvf *.tar.gz 建库 由于下载的
[https://sr-c.github.io/2018/10/02/local-nr-database/](https://s…
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hi
We are running kraken2-build using the docker image staphb/kraken2 on about 30k genomes, we use 75 threads and 120GRAM.
it's been running for 12 days and we see no progress in the logs or any fi…
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Hi is there a way to get the full taxonomy for all the sequences on the RVDB. I used NCBI's Entrez Programming Utilities to extract taxonomy from accession numbers from my TBlastx results, but only a …
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Hi @nick-youngblut,
when I try to build the gtdb database using r207, I get:
```
gtdb_to_diamond.py -o gtdb gtdb_proteins_aa_reps_r207.tar.gz taxdump/names.dmp taxdump/nodes.dmp
2023-08-23 13:53…
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I would suggest rebuild metabuli viral reference database using current official viral taxonomy provided on https://ictv.global/vmr
Technically, it is not difficult.
Your tool processed it very smo…
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Itemcode - CCA4018
MRP- 105
Rate -100
Billing Rate - 78.125
Amount -78.13
Tax Per 28
Taxable 78.13
Tax amount 21.88
Total 100.01
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Dear,
I'm trying to use OMArK to assess the quality of a genome annotation and to be able to compare multiple ones later.
However, whenever I try to run OMArK with the command `omark -f killi_lift…
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the GlyGen team had a meeting and decided on the next species we would like to add to GlyGen over the next few releases:
* Bovine (2.7)
* Zebrafish / Hamster (2.8)
* Rice (2.9)
The number in par…