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Hi Everyone, Baraa and I interviewed Sam Chorlton last week and as Baraa posted, we thought it was a great project, needing more refinement at the team lead level. Sam got back to us filling all these…
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Hello everybody,
I am a beginner with NGS analysis, I am trying to run spades on bacterial data but have error messages don't know how to fix it, could you help me please. I made the QC step + trimm…
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Dear author,
I am trying to use your package RIL-seq for my bacterial chimeric read analysis. I believe I installed correctly and ran correctly but failed in the very last step somewhere.
I load…
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To make it easier to offer suggestions, I am first going to build a work environment anyone who uses the `master` repository follow.
# Setting the stage
I downloaded the Prochlorococcus metapang…
meren updated
6 years ago
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Hi
Although, I understand CheckM and ANVIO use different sets of SCGs to estimate genome completeness and precision, I was surprised by the amount by which the estimates varied
I binned my conti…
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Hi,
I am using CANU 1.6 in Linux to assemble a bacterial genome using 1D Nanopore reads. The program is running fine but I have many questions regarding the interpretation of the outputs and the stra…
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When I provide a gbk reference input, I get the following error below. This did not occur using a fasta reference.
Thanks.
java.lang.RuntimeException: Error parsing property 'ref.AE015924.codonTa…
ohlab updated
6 years ago
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specify if wanted by the user for prokka to use specific reference sequences during annotation.
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Hi, I am using Canu 1.6 to assemble two closely related bacterial genome of 2.5mb from nanopore whole genome sequencing. However, I was able to get a close and circularized for one genome but not the …
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Hi,
Many thanks for developing this great assembler.
I have recently updated to version 2.0 version of ABruijn and testing it out on relatively complex nanopore metagenomics samples. The eukary…