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Hey man, when I draw venn diagram based on bed files, intervene works well, but when I tried to modify the font of the texts in the out.pdf, it shows "Edit Text Tool doesn't support the type 3 font".h…
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I installed all the prerequisites on python3.6 and am getting the following error when trying to use the library.
matplotlib versions:
root@thehost:~# pip3 freeze | grep mat
matplotlib==2.2.2
…
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Hello,
I am trying to use your lib to make differential analysis for a data science project. I had to make some changes to your code because sometimes sets are empty and for the visualization, venn3_…
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Plot venn diagram of number of overlapping basepairs between >2 .bed files with the area of venn representing proportion of overlap.
Steps -
1. perform bedtools intersect between given .bed files to…
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From @tmargus, first mentioned in Issue #34
> It runs up to STAR alignment and finished with empty BAM files.
> I found that reason was input method for STAR. It assumes input fastQ to be compres…
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When I try to run the example data in first step:
`prepare-rpbp-genome c-elegans-test.yaml --overwrite`
I met this error:
subprocess.CalledProcessError: Command 'split-bed12-blocks /home/sun/…
PSSUN updated
6 years ago
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Currently, `conda-forge::r-venndiagram=1.6.17` is not compatible with `conda-forge::r-gridextra=2.3`.
I am updating the feedstock to `conda-forge::r-venndiagram=1.6.18` in conda-forge/r-venndiagra…
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As of Tues 17 Apr 2018, it is no longer possible to run `docker build` on the notebooks `Dockerfile`.
One issue is that the specified version of Java is no longer available for download at the Orac…
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From Charlie:
> I am having trouble running it on my data (human genome, refSeq genes in GTF annotation, de novo genes in GTF annotation, ensemble rRNA). I've confirmed in IGV that the GTFs look ap…
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Hi Greg,
Just a quick comment on something I spotted: in the manuscript you mentioned you've used _median_ absolute deviation (MAD), but in the process_data.ipynb notebook you seem to use the pd.Da…