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greenelab
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tybalt
Training and evaluating a variational autoencoder for pan-cancer gene expression data
BSD 3-Clause "New" or "Revised" License
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Modify Tybalt to handle missing values for incomplete data
#156
yagmuronay
opened
3 years ago
4
Passing list-likes to .loc or [] with any missing label will raise KeyError in the future, you can use .reindex() as an alternative.
#155
yagmuronay
closed
3 years ago
2
Error when setting up environment
#154
matcyr
closed
3 years ago
7
ERROR: VAE Model reconstruct the gene expression data
#153
Sithara85
closed
2 years ago
4
Matching pancancer expression to metadata
#152
GlastonburyC
closed
4 years ago
4
t-SNT visualization
#151
RunenrCode
closed
4 years ago
2
Features that represent biological signals
#150
ZohrehShams
closed
4 years ago
3
Sampling distriubtions
#149
spadavec
closed
5 years ago
7
Zero'd out training
#148
spadavec
closed
5 years ago
3
Fixing WebGestalt to 0.3.0
#147
gwaybio
closed
5 years ago
0
SKCM High Weight Fix
#146
gwaybio
closed
5 years ago
0
Sampling space for specific genes
#145
spadavec
closed
5 years ago
4
Something wrong in extracting weights?
#144
tjiagoM
closed
5 years ago
3
move assert to after checking test
#143
gwaybio
closed
5 years ago
0
Add git-lfs instructions
#142
gwaybio
closed
5 years ago
0
Replace data in encoded_adage_features.tsv
#141
arielah
closed
5 years ago
1
Hotfix combine models
#140
gwaybio
closed
6 years ago
0
Remove EZ Compression
#139
gwaybio
closed
6 years ago
0
Hotfix save test
#138
gwaybio
closed
6 years ago
0
Compile Model Hotfix
#137
gwaybio
closed
6 years ago
0
Add test set to DataModels class
#136
gwaybio
closed
6 years ago
1
Remove simulation analysis
#135
gwaybio
closed
6 years ago
0
readjust relative path imports
#134
gwaybio
closed
6 years ago
0
add util import to init
#133
gwaybio
closed
6 years ago
0
Hotfix for pip install
#132
gwaybio
closed
6 years ago
0
Save reconstructed matrices
#131
gwaybio
closed
6 years ago
0
Hotfix: Remove Markdown Summary
#130
gwaybio
closed
6 years ago
0
Remove Initial Z Parameter Sweep
#129
gwaybio
closed
6 years ago
1
Saving the population of models for each ensemble across all z dimensions
#128
gwaybio
closed
6 years ago
0
ADAGE Implementation Issues
#127
gwaybio
closed
6 years ago
2
Updating code and visualization for ADAGE tied weights
#126
gwaybio
closed
6 years ago
1
Reorganize repository
#125
gwaybio
closed
6 years ago
0
add setup.py file for tybalt
#124
gwaybio
closed
6 years ago
3
Adding option to tie ADAGE weights together
#123
gwaybio
closed
6 years ago
1
add file format quick fix
#122
gwaybio
closed
6 years ago
0
Reproducing separation
#121
zalky
closed
6 years ago
3
Z dimension parameter sweep visualization and results
#120
gwaybio
closed
6 years ago
2
Adding Results and Visualizations of WGCNA-Based Simulation Analysis
#119
gwaybio
closed
6 years ago
3
Quick Fix to Simulation Processing
#118
gwaybio
closed
6 years ago
0
Scripts to Loop over hidden layer (z) dimensionality
#117
gwaybio
closed
6 years ago
2
Parameter Sweep over a Representative Set of Latent Space Dimensionality
#116
gwaybio
closed
6 years ago
2
Add R packages to environment.yml
#115
gwaybio
closed
6 years ago
2
Adding ADAGE model to tsne visualization
#114
gwaybio
closed
6 years ago
2
Simulation Analysis Scripts
#113
gwaybio
closed
6 years ago
2
Adding Simulation Evaluation Framework
#112
gwaybio
closed
6 years ago
6
Adding DataModel Class
#111
gwaybio
closed
6 years ago
0
Update Classes to Keras 2.1.3
#110
gwaybio
closed
6 years ago
0
add missing colon!
#109
gwaybio
closed
6 years ago
0
Update conda environments
#108
gwaybio
closed
6 years ago
0
Add Simulation Data
#107
gwaybio
closed
6 years ago
0
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