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Hi. This was an old issue (https://github.com/marbl/canu/issues/72) and back then, the unitigs.gfa output was not suitable for visualisation using bandage. Was just wondering if there has been any up…
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Dear John,
I am using unitig-caller to create a unitigs.fasta file as input for pyseer. However, when using the unitig file as input for pyseer with the basic command:
`pyseer --phenotypes GGI.p…
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I'm pretty sure the snakefile is out of date for the 2.X changes to spacegraphcats
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I am wondering about the gfa output - is there any documentation about the lines beginning with `A` ? I assume that is giving the locations of the reads on the unitigs/contigs. I would really like t…
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Hi,
I have an issue when using Bifrost (version : 1.0.5) to query a colored graph for the presence/absence of queries in each color of the graph. Indeed, the resulting file only contains a single …
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please `sigProfilerExtractor` will not run with my vcf file.
How can i convert my vcf file to the ICGC-like vcf format you mentioned in the manual? I'm searching online but haven't got any hints yet…
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Hello,
I'm having a `Aborted(core dumped)` error with **alignGFA** in **4-unitigger** in **unitigging**.
### Command:
work.sh:
`/work/assembly/work_assembly genomeSize=410000000 -pacbio-raw /w…
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Hello,
I am trying to get a polished sequence after canu:
python3 '/home/grid/nanopolish/scripts/nanopolish_makerange.py' '/data/Varicovorax/Varicovorax/20210204_1720_X2_FAP14911_6902f034/Analysi…
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Running pyseer LMM on a set of unitigs derived from cholera samples, at some concentrations of antibiotics while heritability is measures as zero (h^2 = 0.00), there are significant hits in the result…
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[hifiasm.log.txt](https://github.com/chhylp123/hifiasm/files/5358719/hifiasm.log.txt)
Hi,
Thanks for the amazing tool, I'm a bit new to genome assembling, and have just tried hifiasm using public…