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### I am attempting to recreate your R^2 first vs second half CDS plot in the BMC Genomics Paper, except with incorporating P-sites offsets via a txt file that I've determined based upon the plastid m…
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[test4.txt](https://github.com/raerose01/deconstructSigs/files/1095857/test4.txt)
Certain genomic profiles are generating the error:
Error in if (trimer %in% all.tri) { : argument is of length z…
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Hi,
On the Query page, when Protein Levels (Mass spectrometry) is selected under Select Genomic Profiles, there is no "Tumor samples with Mass Spec data" under Select Patient/Case Set.
For example, …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/menggf/DEComplexDisease
Confirm the following by …
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This looks like really useful work - is it still being maintained? Anybody using it for real?
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Hi,
I have noticed that boot.ppfst fails and gives an error message if populations are not sorted.
The issue is easy to solve by sorting the dataframe according to the pop column.
Cheers
Juan
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Tasks:
- [x] Add GSVA checkbox to the "Select Genomic Profiles" UI section
- [x] Implement the API between the query page and the pop-up page(s)
- [x] Add button and context menu for selecting gene…
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Hello,
I am trying to use FREEC on a paired (Tum/Norm) WGS data set of Illumina paired end bam files. I keep getting the following error
```
finished reading T62.sorted.dup.recal.bam
PROFILING [tid=4…
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Assuming Davide is the BOF session leader, I'll fill everyone else in, in the order of my memory:
__Additional collaborators -- First Name, Last Name (Affiliation)__
Aaron Lun (CRUK Cambridge Inst…
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Hi,
I would like to ask in case of some genomes that we have been analyzed (assembled Illumina sequencing), the contamination percentage is over 100% or even 200%. What does it really mean in those…