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Hi @tangerzhang,
I am running allhic with a genome of size around 3 Gb, at a read coverage of 100x.
I observed super large sizes of intermediate files during pruning step, like below:
total …
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Hi,
I have assembled one plant genome which was assembled before and assembly size were 120mb. I have assembled the same genome with minimap2 + miniasm + racon pipeline but final assembly size is 1…
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Hello everyone
I am working on the heterozygous genome with a diploid genome size of 2.6GB. I have assembled it with Canu software, firstly can I use the assembly for phasing??
I want to generate …
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What is the output supposed to look like?
I have a bcf.gz file that I ran hoping to calculate distances between 347 individuals. I do not think the documentation is super clear, so I ran it like th…
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singularity exec --bind /home/eniac/madhu_mito/:/home/eniac/madhu_mito docker://ghcr.io/marcelauliano/mitohifi:master mitohifi.py -r /home/eniac/madhu_mito/A5_mitochondria_genome.fastq -f /home/eniac…
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I am trying to create fastq file(s) for each respective read group within the cram file. There should be a total of 4 different files instead of the 1 large fastq file that has been made. Are there …
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Add papers about plant genome size as responses to this issue!
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Would be ideal to use conditionals to run specific subworkflows.
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I was testing fastgather with some fecal microbiome sample, and noticed that while fastgather does use much less memory compared to sourmash gather, it actually takes much longer to finish. When using…