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sanger-tol
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treeval
Pipelines for the production of Treeval data
https://pipelines.tol.sanger.ac.uk/treeval
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Merging main to galaxy
#303
DLBPointon
closed
1 day ago
1
Generate csv fix
#302
yumisims
closed
3 days ago
1
check read group in the input cram files and split the containers based on different read group.
#301
yumisims
closed
3 days ago
1
Adding sections to paper and correction to rapid
#300
yumisims
closed
1 month ago
1
Added method text
#299
weaglesBio
closed
1 month ago
1
Dp24 hotfix
#298
DLBPointon
closed
3 days ago
4
[1.2.0] - PacBio Only
#297
DLBPointon
opened
1 month ago
5
[1.1.2] Remove executables from bin and generate containers if required
#296
DLBPointon
opened
1 month ago
0
Reacov bedname
#295
yumisims
closed
2 months ago
1
gap track need sorting to avoid error
#294
yumisims
opened
2 months ago
0
1.1.0 - Ancient Atlantis
#293
DLBPointon
closed
2 months ago
1
selfcomp fix and telomere output fix
#292
yumisims
closed
3 months ago
2
1.1.0 - Ancient Aurora
#291
DLBPointon
closed
2 months ago
3
Dp24 1 1 0 update
#290
DLBPointon
closed
3 months ago
1
Paf coverage
#289
yumisims
closed
3 months ago
2
Dp24 patch restore
#288
DLBPointon
closed
3 months ago
1
FREE UPGRADE - Update tests
#287
DLBPointon
closed
3 months ago
3
config update
#286
DLBPointon
closed
3 months ago
0
[1.2.0 - Ancient Destiny] Chunk fasta reads for better parallelization for revio pacbio data
#285
DLBPointon
opened
3 months ago
4
[1.3.0 - Ancient Puddlejumper] - Yet Another Module Update!
#284
DLBPointon
opened
3 months ago
0
Dp24 pretext fix
#283
DLBPointon
closed
3 months ago
4
Genomic data files are being out put as *null*
#282
DLBPointon
closed
3 months ago
0
adding csi to the repeat density tabix
#281
DLBPointon
closed
4 months ago
1
pretext map_order
#280
yumisims
closed
4 months ago
1
containerising pretext stuff
#279
yumisims
closed
4 months ago
1
Some resource equations are not parsed correctly
#278
DLBPointon
closed
4 months ago
1
Update outputs for recent changes.
#277
weaglesBio
closed
3 months ago
0
Dp24 fix genomesub
#276
DLBPointon
closed
4 months ago
3
Pretext and hic
#275
yumisims
closed
4 months ago
1
add avgcov process and adjusted resources
#274
yumisims
closed
4 months ago
4
Avgcov
#273
yumisims
closed
4 months ago
1
scaffold based average coverage plot
#272
yumisims
closed
4 months ago
1
[1.1.1 - Ancient Aurora] - pretextmap, pretextgraph, pretextsnapshot container generation
#271
yumisims
closed
3 days ago
3
Fastk fix
#270
yumisims
closed
4 months ago
1
minimap2 related memory adjustment
#269
yumisims
closed
4 months ago
2
windowmasker resource
#268
yumisims
closed
4 months ago
1
Remove max scaff parameters from RAPID workflows
#267
weaglesBio
closed
4 months ago
1
MerquryFK - segmentation fault on large genomes
#266
weaglesBio
closed
4 months ago
5
Updates to the oncomplete and remove snapshot closes #263
#265
DLBPointon
closed
4 months ago
2
Remove duplicate fastkcofig
#264
yumisims
closed
4 months ago
1
Multiple pipeline complete messages
#263
DLBPointon
closed
4 months ago
0
repeat density workflow resource allocation
#262
yumisims
closed
4 months ago
1
remove duplicate module config
#261
yumisims
closed
3 days ago
2
Remove max scaff parameter from Rapid pipelines
#260
weaglesBio
closed
4 months ago
0
Dp24 only csi
#259
DLBPointon
closed
4 months ago
1
larger genome alignment should go to basement for now
#258
yumisims
closed
4 months ago
3
addiing new mem requirements for genomecov
#257
DLBPointon
closed
4 months ago
2
MORE UPDATES!
#256
DLBPointon
closed
4 months ago
1
TABIX and CSI again
#255
DLBPointon
closed
4 months ago
0
small bug found in config
#254
yumisims
closed
4 months ago
2
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