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sanger-tol
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treeval
Pipelines for the production of Treeval data
https://pipelines.tol.sanger.ac.uk/treeval
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small bug found in config
#254
yumisims
closed
4 months ago
2
Dp24 resource updates
#253
DLBPointon
closed
4 months ago
2
Resources review - specify for each module (
#252
weaglesBio
opened
4 months ago
6
v2 - PNG display plugin for JBrowse
#251
DLBPointon
opened
4 months ago
1
Removal of hires pretext snapshot
#250
DLBPointon
closed
4 months ago
0
Robustness Assessment
#249
yumisims
opened
5 months ago
0
Dp24 moving logic
#248
DLBPointon
closed
4 months ago
1
ci update
#247
DLBPointon
closed
5 months ago
1
Dp24 moving logic
#246
DLBPointon
closed
5 months ago
1
BAMTOBED_SORT update temp dir
#245
weaglesBio
closed
5 months ago
1
BAMTOBED_SORT - Temp file directory invalid.
#244
weaglesBio
closed
5 months ago
0
v2 - Mapped subsetting
#243
DLBPointon
opened
5 months ago
1
Dp24 minor corrections
#242
DLBPointon
closed
5 months ago
1
Documentation: Add updated images and update output.md
#241
weaglesBio
closed
5 months ago
1
added tmp dir to sort
#240
yumisims
closed
5 months ago
1
DO NOT MERGE
#239
DLBPointon
closed
5 months ago
1
Documentation: Add workflow updates for galaxydev
#238
weaglesBio
closed
5 months ago
1
Treeval gxy fixes (Added RAPID_TOL entry point / updated resources)
#237
weaglesBio
closed
5 months ago
1
Update resources: CRAM_FILTER_ALIGN_BWAMEM2_FIXMATE_SORT/CRAM_FILTER_MINIMAP2_FILTER5END_FIXMATE_SORT
#236
weaglesBio
closed
5 months ago
0
Create new entry point RAPID_TOL
#235
weaglesBio
closed
5 months ago
0
Dp24 ci updates
#234
DLBPointon
closed
5 months ago
1
Plz ignore
#233
DLBPointon
closed
5 months ago
1
testing commit
#232
yumisims
closed
5 months ago
1
Updates to some modules / pretext updates re-applied / mummer fix
#231
DLBPointon
closed
5 months ago
1
Updating mummer
#230
DLBPointon
closed
5 months ago
0
use docker to run the test
#229
gq1
closed
5 months ago
3
Update resources for GET_PAIRED_CONTACT_BED
#228
weaglesBio
closed
5 months ago
1
csv generator should be changed to only accept absolute paths
#227
DLBPointon
opened
5 months ago
0
UPDATE: Move some logic from the workflow to the modules.config
#226
DLBPointon
closed
3 months ago
0
Update ci.yml
#225
gq1
closed
5 months ago
1
Hic opt
#224
yumisims
closed
5 months ago
3
Dp24 juicer fix
#223
DLBPointon
closed
5 months ago
1
## `nf-core lint` overall result: Passed :white_check_mark: :warning:
#222
Rathnayaka1988
closed
5 months ago
5
fix for tabix, updating the rest of the modules
#221
DLBPointon
closed
5 months ago
1
Updating samtools modules
#220
DLBPointon
closed
5 months ago
2
Dp24 fix modules
#219
DLBPointon
closed
5 months ago
2
Dp24 bedtools updates
#218
DLBPointon
closed
5 months ago
3
CONCATMUMMER --> CAT_CAT
#217
DLBPointon
closed
5 months ago
2
Minor updates to the FKProf config
#216
DLBPointon
closed
5 months ago
2
Updating juicer to include flag
#215
DLBPointon
closed
5 months ago
1
Skip Juicer on RAPID workflow
#214
weaglesBio
closed
5 months ago
0
UPDATE ALL THE MODULES
#213
DLBPointon
closed
5 months ago
1
Galaxy dev
#212
DLBPointon
closed
5 months ago
1
Update to BUSCO 5.5.0
#211
weaglesBio
closed
5 months ago
3
Adding -S (Buffer size) and -T (temp dir) to mitigate sort error.
#210
DLBPointon
closed
5 months ago
1
Update the modules
#209
DLBPointon
closed
5 months ago
1
Dp24 module change
#208
DLBPointon
closed
5 months ago
1
Dp24 yaml input update
#207
DLBPointon
closed
5 months ago
1
Dp24 synteny 1gb
#206
DLBPointon
closed
5 months ago
1
Dp24 selfcomp 1gb
#205
DLBPointon
closed
5 months ago
3
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