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sanger-tol
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treeval
Pipelines for the production of Treeval data
https://pipelines.tol.sanger.ac.uk/treeval
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Update to BUSCO 5.5.0
#211
weaglesBio
closed
6 months ago
3
Adding -S (Buffer size) and -T (temp dir) to mitigate sort error.
#210
DLBPointon
closed
6 months ago
1
Update the modules
#209
DLBPointon
closed
5 months ago
1
Dp24 module change
#208
DLBPointon
closed
6 months ago
1
Dp24 yaml input update
#207
DLBPointon
closed
6 months ago
1
Dp24 synteny 1gb
#206
DLBPointon
closed
6 months ago
1
Dp24 selfcomp 1gb
#205
DLBPointon
closed
6 months ago
3
Updating my selfcomp workflow with galaxy
#204
DLBPointon
closed
6 months ago
1
hicmapping workflow refinement
#203
yumisims
closed
5 months ago
1
Genealign
#202
yumisims
closed
6 months ago
1
Dp24 genome selection
#201
DLBPointon
closed
6 months ago
2
REQUEST: Synteny genome selection
#200
DLBPointon
closed
6 months ago
0
mummer optimisation
#199
yumisims
closed
6 months ago
0
Dp24 synteny fix
#198
DLBPointon
closed
6 months ago
3
Synteny isn't running consistently
#197
DLBPointon
closed
6 months ago
0
update busco version in the busco workflow
#196
yumisims
closed
6 months ago
0
Dp24 full test
#195
DLBPointon
closed
6 months ago
4
CAT_CAT -> Galaxy
#194
DLBPointon
closed
6 months ago
1
Readcov
#193
DLBPointon
closed
6 months ago
3
Add subsample and branch hic_mapping
#192
weaglesBio
closed
6 months ago
3
Replace CAT_CAT with seqtk_concat
#191
DLBPointon
closed
5 months ago
1
Galaxy dev kmer read coverage
#190
DLBPointon
closed
6 months ago
2
CAT_CAT should only be run on file count > 1
#189
DLBPointon
opened
6 months ago
0
Cat config fix
#188
weaglesBio
closed
6 months ago
1
Gene alignment - invalid output extension
#187
weaglesBio
closed
6 months ago
0
Update to the deault github runner
#186
gq1
closed
7 months ago
5
Dp24 ciupdate
#185
DLBPointon
closed
7 months ago
5
Update GitHub CI run on large paid Github runner
#184
weaglesBio
closed
6 months ago
1
Kmer output filename incorrect
#183
weaglesBio
closed
7 months ago
0
Removing extra spaces in config
#182
DLBPointon
closed
8 months ago
2
Too many spaces in config stop better resource allocation
#181
DLBPointon
closed
8 months ago
0
Update DOCS
#180
DLBPointon
closed
8 months ago
0
Add max cutoff coverage track
#179
weaglesBio
opened
8 months ago
0
CAT_CAT & FASTK_FASTK in KMER causing naming issues
#178
DLBPointon
closed
8 months ago
0
Replace references to log2 to log
#177
weaglesBio
closed
8 months ago
1
Updates to yaml and references + formatting
#176
DLBPointon
closed
8 months ago
3
Dp24 yaml fixes
#175
DLBPointon
closed
8 months ago
1
Add args to stop using the /tmp directory - should be optional in future
#174
DLBPointon
closed
8 months ago
0
Dp24 tmpfix
#173
DLBPointon
closed
8 months ago
3
Replace references to coverage log2 with ln.
#172
weaglesBio
closed
8 months ago
0
Add .pretext output
#171
weaglesBio
closed
8 months ago
1
Output .pretext files to hic_files.
#170
weaglesBio
closed
8 months ago
0
Adjust images again
#169
DLBPointon
closed
8 months ago
0
Generalise yaml values
#168
DLBPointon
closed
8 months ago
1
Dp24 better docs
#167
DLBPointon
closed
9 months ago
0
Incorrect use of bwa-mem2 in GENERATE_CRAM_CSV
#166
DLBPointon
closed
8 months ago
0
Update README.md
#165
DLBPointon
closed
9 months ago
1
Dp24 pretextgraph
#164
DLBPointon
closed
8 months ago
4
minimap2 align with increasing index size
#163
yumisims
closed
6 months ago
3
Release 1 Issue: So Many Errors
#162
DLBPointon
closed
8 months ago
0
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