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Hi all,
I ran MTAG for 6 traits. The summary statistics were from GWAS using mixed models. Trait 5 was categorical, and all others continuous. To run MTAG, I converted the z score of trait 5 to …
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The HpoDisease class now has a TermWithFrequency object.
However,there are many other modifiers that a term can have including onset and any of the terms from the Clinical Modifier hierarchy.
It wou…
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As mentioned in #21, we will be having a short one-day meeting on this competition, partly in order to see what went wrong/right, and partly to discuss this area of science in more depth.
This Issu…
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Hi,
I am processing 550 files from a Q-Exactive lipidomics experiment where data dependent MS/MS data was collected. I only want to use the MS1 data to generate a peak area data matrix. I have conv…
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![ldpred2_auto_chain_convergence](https://user-images.githubusercontent.com/128096956/231568818-6b8a0868-3fad-4374-8e2f-1dadd554e296.png)
Dear Author,
I have been using LDpred2-auto for my analyse…
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We have many example subclasses to help show how OBO Core can be used. These should be annotated to show that they will not be included in the final OBO Core. We can use this annotation to remove any …
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Part of https://github.com/monarch-initiative/mondo/issues/7362
Focussing on Table 1.
Spreadsheet to use is here: https://docs.google.com/spreadsheets/d/1PY5b4urSuz3tPvEjWflzV3R-up5OJTapzxB_rD3Nw…
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Some use cases:
1) recording the measurement process for a specific trait.
2) recording the methods used to elicit a finding (ie: in-situ hybridization assay was used in a gene expression study)
…
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We should name the HTTP endpoints for methods after the method names themselves, instead of nesting them in a REST-like hierarchy. Our API consists of POSTing lots of request objects, which isn't very…
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Integration of lists with information about chromosomal segments (including several genes e.g., ”chr22: 19,037,148 - 21,228,744”) for use in Scout in the same manner as we use gene lists. This is esse…