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Can you share what steps you take to generate the vcf's, i.e. from after you run variant calling?
I.e. do you run haplotypecaller, then VQSR, then SnpEff, and if so, with which settings?
It woul…
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Let us put in an application.
https://summerofcode.withgoogle.com/
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Hi everyone, if people aren't yet sick of discussing the finer points of GFA implementation, I've got another one! I like the concept of paths in an assembly graph and use them a lot in Bandage, so I'…
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Hello,
I encountered the following error when compiling smartdenovo. Could you help to diagnose what might have caused this problem? Thanks!
....
wtzmo.c:91:1: note: in expansion of macro ‘define…
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# Library Carpentry - state of play October 2016
This document is an attempt to define/agree what we consider to the be the core principles of Library Carpentry. It is written in the context of the (…
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Hello, I ran "git clone --recursive https://github.com/vcflib/vcflib.git" and then "cd vcflib". But I got the following error when running "make". Could you help me to figure out what might cause the …
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Requested in #311 by @jcgrenier:
> One could think of some more high level QC. One that could use the output of relatedness, or relateness2 command from the newest version of vcftools that could be…
ewels updated
7 years ago
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Hi jonathan,
I run smc++ with command estimate for effect population size of human species. Now, my detail setting are:
gcc version 4.4.7
python 3.5
mpfr 1.2.0
gmp 3.5.0
I use conda to install s…
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Hi,
I have noticed that boot.ppfst fails and gives an error message if populations are not sorted.
The issue is easy to solve by sorting the dataframe according to the pop column.
Cheers
Juan
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@labsquare/developers
S. Schutz, P. Marijon, E. Trounev, J. Roquet, F. Pina-Martins, N.
Lavielle, J. Sallou , O. Gueudelot, AS. Denommé
You may want to add a footer or something else to displa…
dridk updated
7 years ago