-
Hi,
We're trying to make VIRsorter run on our cluster. So far it seems to be working.
However, when comparing output generated from the online tool (Iplant) with the output generated from the wra…
-
I encountered an error while running the assemble workflow on Atlas (version 1.0.19). From the counts_per_region_.log, the error was
`Warning: Unknown annotation format: gtf. GTF format is used.`
…
ghost updated
6 years ago
-
Control Measure Labels have been tested by @Dbarnes1 with current mil2525d.stylx (7/7/15), MilitaryOverlay.gdb.zip (6/23/15). The table below shows symbols that have issues with missing/erroneous labe…
-
Hi Simon,
Me again. I am using the docker version of VirSorter. It looks like the `--ncpu` command is not working.
When I launch an instance of VirSorter. I get the following output:
```
$ do…
-
https://github.com/pnnl/atlas/blob/ea2bbf94e420f6aa125815d29f3f0ab97ec6c790/atlas/rules/assemble.snakefile#L59
when processing paired end reads, some may be left as singletons, they are stored in t…
-
First of all, let me say that blobtools has been an excellent program to work with. However, I initially was a little bit disappointed with the results of the contaminant cleaning, my second and third…
-
Hi,
Thank you for creating Blobtools. It's a very promissing program!
I installed it in order to help with the decontamination of a genome assembly. I just got my first job completed and I discove…
-
Can we run VirSorter from the perl wrapper script instead of docker? I'd like to run it on our local server cluster, but I don't have root privileges there, so using docker isn't an option. When I try…
-
I would like to know why CCOT and ECO do not use adaptive decontamination strategy as SRDCF_decon do and scale estimation as fDSST do? Isn't SRDCF_decon an effective method to solve the problem of mod…
gzpan updated
7 years ago
-
Basically I want to use being circular as a criteria for considering something as being a potentially viral contig as well if it passes virsorter decontamination mode. Perhaps is there info in one of …