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Hi, I ran graftM create with intention to create a pkgs for a list of protein sequences and got the following error:
04/15/2018 03:46:24 PM INFO: Building gpkg for GUS923.gpkg
04/15/2018 03:46:24 PM…
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### Description
This is required to avoid problems with RUDY heatmap when ORFS scripts initiate grt but not fastroute. Further details in PR https://github.com/The-OpenROAD-Project/OpenROAD/pull/55…
gudeh updated
1 month ago
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A place to dump relevant literature and possibly summaries too.
Tags in the format `[tag_name]` are added below each paper to allow for searching for specific topic.
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Hi!
I am using GenEra ver. 1.4.2 installed by "git clone" command.
After 1st step (diamond), the result looks like proper.
**$head 84072_Diamond_results.bout
TRINITY_GG_1_c0_g1_i6.p1 TRINIT…
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Hi,
When I ran the updated get_alleles.py to process a genome file, I encountered the following error message and the output file contains no content.
**Error prompted in the terminal**
```python…
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```
What steps will reproduce the problem?
brunazamith@brunazamith-POS-ECIG41BS:~$ cd Downloads/interproscan-5.13-52.0
brunazamith@brunazamith-POS-ECIG41BS:~/Downloads/interproscan-5.13-52.0$
./inter…
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This cluster was found in #7 as strong (+/-) correlation in both ORF and CRISPR but not (completely) strongly connected in the KG.
Looking across ORF and CRISPR plots there, there are a few other …
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Hi,
I'm getting an error when trying to blastn sequences vs NT DB. I also tried to just run the last convertalis command on a different computer and saw it crashed after getting to ~2TB of RAM usag…
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Hello, I am trying to align metagenomic sequences, when I run initPipeline with the following command I get the expected output:
`initPipeline -q -1 Unmapped.out.mate1 -d projectDir -i 300:800`
Pr…
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Hi Shen,
I translated a big nucletide file (~ 2.5G) with Transdecodes, and the translated protein file is also big (1.2 G).
The IDs of translated proteins are similar to ID-A.p1 ID-A.p2 ID-…