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Hi! I followed the instructions to get the viral prediction on my own contigs but the following error popped up:
Error in countSeqFeatureCpp(seqFa, w) :
Not compatible with STRSXP: [type=NULL].
…
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As I have to prepare some virus test data sets anyway I just run 4 assemblies through WtP. Honestly, I do not exactly know what to expect as an outcome from the files (I have to clarify with some guy …
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Dear zifanzhu,
I try to run ViralPip, every step runed fined until metabat2.
According to the logs, the metabat2 commands runed like this:
metabat2 -i viral_1_vf_filtered_contigs/vf_filtered…
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Currently, the population calling model uses an independence based model, so samples are not jointly genotyped. Whilst this is still better than individually calling all samples and merging calls, as …
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Hi all,
I am trying to use mmseqs taxonomy to obtain the putative linage of some proteins from a metagenomic project. The problem I am suffering is that I have some strange results. For intance th…
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I've had success following the **Getting started guide** with both CPU and GPU on the example datasets and now I'm trying to run the CPU version on my own data, _C. elegans_, but am getting an error:
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Dear Simon,
Thank you for your kind help with issue#45 earlier this week.
Currently I am trying to predict viral regions within contigs using your VirSorter
and I was wondering if there is a wa…
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Dear all,
I'm very interested in this tool. I'm actually trying to understand whether it's possible to expand the number of viral genomes to produce another training dataset by adding metagenomically…
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Hi! I am trying to use arriba, but wiith some errors:
> Loading assembly from 'genome.fna'
> ERROR: could not find sequence of contig '10'
That was my Arriba command-line:
`arriba -c S9Chimer…
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Hi,
I'm using VirFinder for the first time and try to figure out where to set the threshold for categorizing into "good" and "bad" predictions. It's not clear to me from the corresponding publicati…