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running the latest mikado using similar cmds to what i used in 2020 with success ...
the cmd:
mikado serialise --json-conf configuration.yaml --xml blastx/mikado.blastx.xml.cocnat_2021.03.23.xml.…
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hi Jon,
I am running funannotate update following predict on three different species. For one species with 19K gene models it finished in a total of 8 hours. For the others with more gene models …
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|Wazuh version|Install type|Action performed|Platform|
|---|---|---|---|
|4.3.0 | dashboard | Install/Upgrade/Remove | RPM/DEB |
Related issue: https://github.com/wazuh/wazuh-packages/issues/66…
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Howdy,
I am trying to add another database to my previously completed run, but EnTAP will not read the results from the previous run and errors out after trying one transcript with this message
`…
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**Are you using the latest release?**
1.8.8 from docker
**Describe the bug**
trinity seems to produce transcripts wich have the same names, pasa cannot handle this
**What command did you issue…
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Hi Jon,
I wanted to switch up the `max_intron_len` parameter in the training/prediction parts from the default setting (3000) to a larger value (25000). However, when running the exact same set of co…
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Hi,
There are too many works activated when doing setup_databases even -c 1.
python mantis/ setup_databases -c 1
ps xf|grep python|wc -l
131
Is it possible to limit the jobs number when d…
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Trinotate Trinotate.sqlite init --gene_trans_map Trinity.fasta.gene_trans_map --transcript_fasta Trinity.fasta --transdecoder_pep Trinity.fasta.transdecoder.pep
CMD: TrinotateSeqLoader.pl --sqlite T…
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Hi again..
I'm having trouble installing the tool via `conda`. As noted in one of the earlier issues, I updated conda and still the problems persists.
```
conda activate eukulele
conda insta…
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In `train` - expecting to find bin/util/insilico_read_normalization.pl
But its installed in bin/insilico_read_normalization.pl in conda install so I assume should fix the train step to use the path a…