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It would be useful to have a way of computing the frequencies of characters (or a subset of characters) in a sequence. Currently the way to do this is `seq.kmer_frequencies(k=1)`, which handles the fr…
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I am trying to run a LogisticRegression as follows:
void logisticTest(Kmer& k, const arma::vec& y_train)
{
// Train classifier
arma::mat x_train = k.get_x();
mlpack::regression::LogisticRegre…
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I am not getting any alignments when using DALIGNER as a mapper. It works great when I align PacBio reads among themselves, but when I try to align them to a DAM built from the human reference sequen…
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...what is it?
In an ideal world we would have a couple of small ones just to show the commonalities even if you are trying to accomplish different scientific goals. Examples that I think might apply…
rvosa updated
9 years ago
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```
What steps will reproduce the problem?
1. read_fasta
2.
3.
What is the expected output? What do you see instead?
normal behavior. But it throws error like this
from /home/rajkump/Software/biopie…
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```
What steps will reproduce the problem?
1. read_fasta
2.
3.
What is the expected output? What do you see instead?
normal behavior. But it throws error like this
from /home/rajkump/Software/biopie…
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expected sha1sum:
run-argonnite-1 sha1sum 71deaa88265222cd8c27c88980eb5c4f29c966af
failed:
FAILED 19m19.148s 78cfd99 restore old value for single-node jobs
[boisvert@bigmem biosal]$ sha1sum output/…