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Hi,
I am cross-posting [this issue](https://github.com/at-cg/PanAligner/issues/1) which I have submitted to the PanAligner repository, since it has been found by the authors to be a result of the b…
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Hi!
I trained tacotron2 more than 60000 steps but I cannot get alignment properly.
The alignment graph is as follows. Does anyone know the cause of this?
![alignment](https://github.com/NVIDIA/t…
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**Describe the bug**
My Roam graph's edit boxes have switched to right-to-left and I can't figure out how to recover. This breaks the Roam graph since left-to-right languages like English have stra…
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Hi,
Great paper and Congratulations on getting accepted to ACL2024!
Can you describe how/if this method can be extended to multiple attributes other than binary (positive and negative) labels?
Th…
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Hello, I'm a graduated student studying bioinformatics in South Korea.
I'm trying to do detect extrachromosomal DNA (ecDNA) in nanopore long-read targeted sequencing data.
I followed the workflow …
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Hello,
Should embedded paths in a graph affect alignment of reads? I'm running into a situation where my alignments have lower scores when aligned to a graph with embedded paths than when aligned t…
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A quality score can be easily visualized without adding extra elements on viewer.It can be implemented in form of bars for a background color.
Example:
![image](https://f.cloud.github.com/assets/376…
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Hi, anyone is interested in aligning PacBio reads to assembly graph? I tried few examples, it looks vg does not do the right thing. Here are the listed things:
1. align pacbio reads to assembly (base…
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Hi Mikko,
Do you have a method to convert the graph alignment for a single read into a [GFA Path line](https://gfa-spec.github.io/GFA-spec/GFA1.html#required-fields-5)? I want to visualise individ…
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**1. What were you trying to do?**
I would like to use VG to work with long read data aligned to a pangenome graph generated using cactus-minigraph. I've been following the steps described [her…