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Hi all
I meet a problem that
E0226 17:51:54.905934 139873214023488 hhsearch.py:56] Could not find HHsearch database ./alphafold_data//pdb70/pdb70
Traceback (most recent call last):
File "/home…
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## 🚀 Feature
DeepMind's AlphaFold 2 contains several novel modules that may be of general interest to the deep learning community. AlphaFold 2 has recently been reimplemented in PyTorch by [OpenFol…
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[Strategy](https://gwu0.sharepoint.com/:w:/r/sites/GlyGenTeam-GRP/Shared%20Documents/Backend/Documents/PDB%20Structures%20Selection%20Criteria.docx?d=w12390aa496f84d4aa5c91c68d4dc4d86&csf=1&web=1&e=i1…
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Hi,
I have a pqr file generated from an alphafold2 pdb. I am trying to generate an input file with the following command:
`python3 /opt/spack/opt/spack/linux-rhel8-icelake/gcc-11.2.0/apbs-3.4.1-…
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Dear Sir,
We are trying to install a version of AlphaFold2 on our HPC center where we have access to a large number of GPUs.
For Security reasons, there is no possibility to use Docker or S…
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Hello,
I followed the suggested command lines on the git to run TCRdock.
_## Step 1: Parse a TCR:peptide-MHC ternary structure PDB file_
python parse_tcr_pmhc_pdbfile.py --pdbfiles examples/pars…
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Can `easy-cluster` take one of the external databases as input?
ie with one of these that you have listed
```
Name Type Taxonomy Url
- Alphafold/UniProt Aminoacid …
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Hello!
I had taken a look through the vignette, and I did not see a function that allows users to color 3D models by the b-factor found within a pdb file (eg. coloring models produced by AlphaFold …
halg3 updated
1 month ago
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Discussing challenges
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Are there any other alternative way to download this file? bfd_metaclust_clu_complete_id30_c90_final_seq.sorted_opt.tar.gz?