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@frees86
Along with DOM massic concentrations, should we define volumic soil concentrations in mol of labile organic components (hexose, amino-acids, mucilage and cells) per m3 or in mol of C per m3 …
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#### Current behavior:
27 genes are discovered to be uncorrelated with their corresponding reactions in `Carnitine shuttle`.
| Gene | UniProtID | Reaction | GPR | Correlation| Manually check…
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Hello,
While running mhcflurry, I get this error (shown in the last few lines)
2022-08-11 01:32:37,063 - isovar.effect_prediction:112 - INFO - Keeping 0 effects with predictable AA sequences for V…
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There are 2 identifiers for levdopa in NN:
PUBCHEM.COMPOUND:6047 (A small molecule)
UMLS:C0023579 (A Protein)
Levdopa is not a protein, but it is an amino acid. I suspect that this is an over-ze…
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Hello, I am using ggseqlogo to create a sequence logo from amino acids pwm, however, since my pwm also contain 3 phosphorylated amino acids phosphoserine, phosphothreonine and phosphotyrosine, it fail…
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[`models.qa_metric.LocalPairwise`](https://python-modelcif.readthedocs.io/en/latest/qa_metric.html#modelcif.qa_metric.LocalPairwise) is defined on the per-residue level, but as @arogozhnikov explaine…
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A user asked me how to specify some custom amino acids:
Ahx (amino hexanoic acid): C6H13NO2 residue mass = 113.08406
lysyl biotin (aka biocytin): C16H28N4O4S residue mass = 354.17256
We found wor…
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- we should also add basic textbook biochemistry taxon constraints - e.g essential amino acids in mammals
_Originally posted by @cmungall in https://github.com/geneontology/go-ontology/issues/2…
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Hi, thank you for this approach, absolutely fascinating! I'm hoping to use this in a workflow to assess and triage eukaryotic genome annotations using FoldSeek. The range of protein sequences can be s…
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Dear developers:
Hi!
I am trying to run MixMHC2pred on some datasets consisting of MS eluted ligands. However, some peptides yielded no results, only a row of NA. This is strange becaus…