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Hi,
I would like to infer a model on a generated data set where "proteins" have only 2 states available for each site. For example :
```
MSA = [ [ 1, 0, 1, ... , 0, 1, 0],
......,
…
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#### Current behavior:
Hi all,
The reactions in the subsystem `Peptide metabolism` are all **reversible**, meaning that peptides can be formed from individual amino acids without an ATP cost. Also…
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See title.
Logo(df, stack_order='fixed') results in stacks wherein the glyphs appear in alphabetic order, rather than in the order of df.columns
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It seems as if not all [_chem_comp.name](https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Items/_chem_comp.name.html) are pushed into [HETNAM](http://www.wwpdb.org/documentation/file-format-con…
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http://orthomolecular.org/nutrients/proteins.shtml
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Dear authors, @pchaumeil
Hi! I'm a post-doctor researcher from China and my name is Wenkai Teng. Just in these days I have tried to classify a group of genomes using GTDBtk (v2.4.0) with the late…
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1. **Lab Name**: **Biochemistry Virtual Lab I**
2. **List of Experiments and Repositories**:
Isoelectric Precipitation of Proteins: Casein from Milk
https://github.com/virtual-labs/exp-casei…
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I encountered an error while using this method: KeyError: 'XcXgXyXtXyXgXd'. So, I checked the result returned by the get_struc_seq method. The seq, which should store the original amino acid sequence,…
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hi @durrantmm, I am preparing to predict smORFs within a length of 100 amino acids. Can the SmORFinder tool handle this task effectively? Alternatively, what modifications could I make to the script t…
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Hi, I have been constructing an Alphaproteobacteria tree recently and using the alignment_pruner.pl to trim the 20% most heterogeneity sites.
According to the script,
```
Use the chi2 statist…