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Hello,
I am very interested to use this tool in my work! I wondered if we had four different biological samples for 10X Multiome (which I've integrated using scRNA and Seurat's integration pipeline),…
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First of all, thank you for developing this great tool! I encountered an error while preprocessing the data using the following section of code:
if (ncores > 1) {
bpparam
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Hello,nice work!
Can you public your processing code of scATAC-seq using ArchR in this paper for learning? Or how you convert your seurat object in signac to ArchR object?
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Hello, I'm trying to subset a cell population in mouse samples from my existing ArchR project and re-run clustering/dimensional analysis. I'm able to subset and create a new project but am consistentl…
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So far, all the vignettes have been focused on cluster-scale analysis, but all can we use ArchR to investigate the regulation mechanism for one gene. For instance, I want to subset the result of getFe…
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Dear developers:
After your answer, I have found a new Seurat object contains all the related ATAC information. Is it possiable to transform the Seurat object into ArchR object?
Th…
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Hi all, I am having an issue with addIterativeLSI , using TileMatrix , I get this error:
ArchR logging to : ArchRLogs/ArchR-addIterativeLSI-34f754ef9709-Date-2024-08-12_Time-22-18-58.603256.log
If…
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This is an issue template made by the developers of ArchR. You MUST follow these instructions.
Questions related to how to use ArchR or requests for new features should be posted in the Discussions…
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Hi,
Is there a plan to add a footprinting analysis module in atac so that it can visualize TF footprints like Signac and ArchR?
I am pretty interested in muon and it could be an alternative tool…
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Hi,
How did you compose those pretty scentific figures? like the panels f and g in your example figure, which show density tracks of scADT-seq and scRNA-seq. Did you plot them by customized pyth…