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I'd like to plot bw files from my ATAC-Seq samples with the same y-axis scale for all samples alongside sashimi plots for my RNA-Seq samples with variable y-axis scales. Would that be possible, or has…
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Hello,
Thanks for developing this great software. It has helped me a lot for integration of unpaired snRNA and snATAC. I recently run another dataset with my previous script following the scglue tu…
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![image](https://github.com/MGI-tech-bioinformatics/DNBelab_C_Series_HT_scRNA-analysis-software/assets/131571032/be36bc84-40a4-4a35-9ee3-d3d65d750fd4)
您好,我在分析ATAC的时候报错如上。请问这个问题应该如何解决呢?
hullv updated
1 month ago
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Hi there,
I think that there is some bug in the count_fragments_features atac features. The gene activity I created from those are very bad looking. This is issue is separate from the other issue w…
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Hi,
missing ATAC components include:
- [ ] ATAC-specific QC metrics (TSS, nucleosome_signal,...) see https://www.sc-best-practices.org/chromatin_accessibility/quality_control.html#calculatin…
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Hey!
Thank you for this great package!
I ran my multiomic data with the stream pipeline and found that it got stuck when generating igraphs.
Specifically in the part below. Any idea?. (I used >…
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Ran a project with reference peaks, but I am unable to generate a count table for the reference peaks:
When the project is run:
1) peaks are still called for each sample individually
2) Each sample…
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Hi dear developers!
Thanks a lot for this very interesting tool :)
It works very fast and intuitively !
I would like to use scMultiSim data in the context of a GRN inference method from multi-o…
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Dear muon-team,
I have converted my scATAC-seq SeuratObject to a mudata object but the information on the fragments files does not seem to be transferred. mdata.uns is empty.
My object is a merge…
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Hi,
Thanks for your excellent work. I have downloaded the multiome ATAC + gene expression BMMCs dataset under accession code “[GSE194122](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19412…