-
Hi,
I am trying to get the CAP1, CAP2 and bacterial loading values from a capscale.phyloseq ordination object and look at bacterial contributions to beta-diversity.
```
ord
-
Feature request please - It would be great if jackknifed_beta_diversity.py could output tab-separated files summarizing the data that are plotted in the PCoA plots. E.g., one text file of tab-separate…
-
`A user interacts with a contingency table to perform common ecological statistics including rarefaction, alpha, and beta diversity`.
- [ ] move the useful parts of the biom table API (#848)
- [ ] int…
-
Dear all, thanks for your fantastic work. How can we calculate the beta diversity of unweighted_unifrac, weighted_unifrac from your pipeline?
-
Good day , I'm using scikit-bio version "0.5.5" and experience issue while computing beta diversity for **braycurtis** metric when array have several (2 or more) zero hits.
### **Steps to reproduce:…
-
In QIIME2-2020.8.0, the [description](https://docs.qiime2.org/2020.8/plugins/available/diversity/beta/) of `qiime diversity beta` function says it accepts `FeatureTable[Frequency | RelativeFrequency |…
-
number of families
phylogenetic diversity
number of genera
evenness
within- and between-plot beta-diversity
-
Hi @KaiHsiangHu,
First of all, thank you for this package, I've really enjoyed using it!
I wanted to check in with an issue I am having, which seems to be something that iNEXT experienced prev…
-
Hello, recently, I tried calculating beta diversity using the `skbio.diversity.beta_diversity`. First, I hvae confirmed that the version of SciPy and scikit-bio is 1.14.1 and 0.6.2, repectively. Secon…
-
We should have some exercises about all major chapters / functionalities.
List systematically what is missing and create issue/issues.
At least:
- dbRDA exercises will require an update
- calc…