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**Lab Name**: Bioinformatics and Data Science in Biotechnology Lab
**Department**: Biotechnology and Biomedical Engineering
**List of Experiments and Repositories**:
1: Writing and…
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Hello,
I am a pHD student in Bioinformatics at the University of Toledo. While my work focuses mainly on Neuroscience, I work with all different times of omics data sets. I would like a video on Se…
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Dependency requirements of pyarrow=14.0.2 limit gtfparse to be used with other bioinformatics tools.
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### Feature Request
We are reaching our CPU limit for our production Terra workspace. This is negatively impacting our pipeline and preventing us from reliably meeting dashboard updates.
This is…
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**Feature Request**
The current logic to cache a file on disk assumes that if the user starts reading
the file from 0 offset then the entire file is supposed to be read and so should be
preemptivel…
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I used the Bioinformatics template to format a submission to a preprint server (biorXiv). The PDF was rejected because there's a copyright notice in the footer. Here's the email I got from the biorXiv…
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An attempt to resurrect the previous discussion in #1689 about common dependencies for Bioinformatics easyconfigs.
@fgeorgatos
@pescobar
@jerowe
@rjeschmi
```
dependencies = [
('bzi…
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Hello!
When I was trying to download the corpus to reproduce using the following command, the error occurred:
```!seq2rel-ds cdr main "/home/XYH/seq2rel-main/notebooks/output/cdr"```
And then I tri…
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Hello - I am relatively new to bioinformatics in general, so apologies if this is simply me missing something.
I had previously run the rf-index command with no issue, which is why getting this er…
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Would be useful to see pipeline examples in a bioinformatics context.
- Tophat on samples
- Index bams
- Run RSEM on each
- Merge outputs together in a matrix (CPM, TPM, FPKM)
- Run RNAQC on combined …