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Using snakemake 6.6.0, the --summary option gives me:
```
snakemake --printshellcmds --jobs 10 --config ss=$PWD/sample_sheet.tsv dge_dir=$PWD/set6_dge --directory /export/proj…
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### Description of feature
Hi,
we are storing our sequencing data in spring-format to reduce disc space. Do you plan to support spring-format besides fastq for sequencing reads in the near future?
…
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It would be nice to make it easier for people to know what should be referenced if they use a pipeline in a manuscript. For example, `nf-core references ` could return a list of the references that yo…
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DIMet is a bioinformatics pipeline for differential analysis of targeted isotope-labelled data.
DIMet supports the analysis of full metabolite abundances and isotopologue contributions, and allows …
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Project Lead: @kipkurui
Mentor: @felipez3r0
Welcome to OL6, Cohort E! This issue will be used to track your project and progress during the program. Please use this checklist over the next few w…
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Dear Developers,
I have installed the pipeline when I reached the running step and submitted the run using this command:
` $ python3 /mnt/e/Bioinformatics/tools/MGI_SARS-CoV-2_Multi-PCR_v1.…
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## What needs changed?
RefSeqMasher Pipeline needs to be pulled out into a plugin. The workflow needs to be imported and then re-exported from Galaxy 21.01 or later as it currently does not function …
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hi - thanks for writing this pipeline and I am looking forward to using it. I ran the install.sh script and produced the following error message:
python: can't open file 'setup.py': [Errno 2] No such…
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We need somewhere a simple vignette documenting recommended standard enrichment workflows using bugsigdb. It could include:
1. (lower priority): data preparation from a couple of the most popular B…
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The underlying `bcftbx.Pipeline.Job` class which is subclassed by `SchedulerJob` now supports returning the exit code of the command that was run (see https://github.com/fls-bioinformatics-core/genomi…