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All models from biomodels had their annotations extracted and put into rdf files. Create the equivalent omex files that combine the rdf file and associated model. Send biomodels a link to the list of…
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---
id: vcell
version: 7.7.0.7
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.7.0.7/biosimulators.json
specificationsPatch:
version: 7.7.0.7
image:
url: ghc…
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Currently `test_biosimulators` runs tests on the following biosimulators: biosimulators_tellurium, biosimulators_cobrapy, biosimulators_cbmpy, biosimulators_bionetgen, biosimulators_gillespy2, biosimu…
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### Contact Details
_No response_
### Location
runBiosimulations
### What happened?
Tried the latest version of a biomodels OMEX file; got this error. Last time it was a SED-ML validation error,…
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### _**Abstract**_
I have been using [biosimulators.org](https://www.biosimulators.org/) as the perspective for our “landing page” as it is our own unique little section of the internet. I am also …
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### Contact Details
_No response_
### Location
runBiosimulations
### What happened?
When running the attached SED-ML file, biosimulations claims there's an error:
```
target /sbml:s…
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- [x] Speed up JSON encoding. Done in #4288.
- [x] Extract specifications of manifest from manifest file (in S3) rather than COMBINE archive file: ~0.3 s.
- [x] Enable COMBINE-API to extract mani…
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### Simulation tool
### Simulation tool
---
id: vcell
version: 7.5.0.27
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.6.0.27/biosimulators.json
specificationsPa…
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@jreadey Is there any particular scheme that you are using for versioning? To better keep track of versions, it could be useful to switch to automated release and versioning through semantic versionin…
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Example: Model: https://github.com/biosimulators/Biosimulators_test_suite/tree/dev/examples/sbml-core/Edelstein-Biol-Cybern-1996-Nicotinic-excitation
Below are simulation runs for GillesPy2 and PyS…