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Hello,
I would love to use this repo to help with my single cell annotation. It seems it is no longer being maintained. I have tried to run some things manually but all the data download links are …
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## Describe the bug
The `nnz` and `n_measured_obs` fields report the same (global?) values for `adata.var.nnz` and `adata.var.n_measured_obs` regardless of the dataset queried.
Tested for diffe…
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For new term requests, please provide the following information:
## Preferred term label
PIPseq
Asteria scRNA-seq
HIVE CLX
## Textual definition
PIPseq: The Fluent BioSciences PIPseq…
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I want to try to build cellxgene-census with my own dataset, follow the [README](https://github.com/chanzuckerberg/cellxgene-census/tree/main/tools/cellxgene_census_builder#readme),
![image](https:…
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EDIT: whoops, this ended up in "sfaira_tutorials" by accident instead of "sfaira". I do not seem to have permission to delete this comment, but happy to repost in the correct repository if you want to…
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Hello,
I seem to be having an issue with opening h5ad files that have a small number of cells recorded - when I subset working h5ad files to 9 cells, the file does not load properly in cellxgene V…
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- [x] Remove the core atlas from the "Component Atlases" section
- [x] Update Component Atlases section as per new mocks with link to cellxgene and download
- [x] Add Analysis Portals Section with …
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- CZI cellxgene: https://github.com/chanzuckerberg/cellxgene - React + Redux app for exploration of large scale scRNA-seq datasets
- Google Neuroglancer: https://github.com/google/neuroglancer - WebG…
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If I load an H5AD in backed mode (`backed="r"`), and call `score_genes()`, it will fail. Works fine on the same dataset loaded in memory cached mode.
Example (run with scanpy 1.4.2, anndata 0.6.2…
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https://sc-fair.org/explore
The filters part is really weirdly shown. Should be a tab on the left (like CELLxGENE), or eventually a texfield above the corresponding fields of the table.