-
Hi again,
I would like to know if the number of times a circRNA is repeated in each read (which I think you call CCS copy number) is reported somewhere in the output of CIRILONG. Mi idea is to get …
-
Dear Sir,
If I have 10 samples (5 vs 5), should I combine all the circRNA ID into list.txt?
-
Dear Sir or Madam,
I have finished to do circRNA calling by DCC and is trying to use CircTest to perform circRNA filtering.
As shown in the document of the function: _Nreplicates: Number of rep…
-
Hi egaffo, I am having the following error message:
[M::mem_process_seqs] Processed 1568628 reads in 49.756 CPU sec, 12.022 real sec
[M::process] read 1568628 sequences (80000028 bp)...
[M::mem_p…
-
-
### Aims/objectives.
The nomenclature for RNA types (table `rna_type`) is fixed *e.g.*
```mysql
+---------+-------------------+
| id | name |
+---------+-------------------+
…
-
Hi, I run CIRIquant and get this error, I don't know how to fix it, this is my code:
```
CIRIquant -t 10 \
-l 2 \
-1 ../1.clean-data/0a_R1.fq.gz \
-2 ../1.clean-data/0a_R2.fq…
-
I tried to run isocirc with test data. It worked great! However, when I tried to run isocirc with my own data, it did not generate isocirc.out, isocirc_stats.out or isocirc.bed. I downloaded the fa d…
-
Greetings,
I cloned the latest version of circminer, completed the installation (make) and builded index for hg38 reference genome.
I keep getting the same error after the circRNA detection is comp…
-
Dear author,
As the title, is there any function in CIRI-long to catch isoforms' counts ?
Or how could I get isoforms' counts instead of circRNA-genes' counts ?
Thanks a lot.