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Hi,
Thanks for CLEAR.
I am in troubles using CLEAR and looking for solutions. I need your help and this is the error log.
```bash
###Parameters:
Namespace(bowtie1='/home/ionadmin/likun…
lssb updated
4 months ago
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I am getting this error
```
/data/Ziegelbauer_lab/tools/NCLscan-1.7.0/NCLscan.py -c /vf/users/Ziegelbauer_lab/circRNADetection/circRNA_daq_v0.8.x/samples_3_032223/nclscan.config -o test -pj iSLK-BAC…
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Thanks for your great tool
I hope to know how to make the bowtie2 index of circRNA junctions and the STAR index?
Thanks a lot
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Hello.. I am currently having an issue with the annotation part. I am using Linux to perform CIRCexplorer2 analysis.
After aligning everything with STAR as described by you,
for instance:
`S…
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Dear Sir or Madam,
I have finished to do circRNA calling by DCC and is trying to use CircTest to perform circRNA filtering.
As shown in the document of the function: _Nreplicates: Number of rep…
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```
+ python /opt/MapSplice2/mapsplice.py -1 /lscratch/61369502/03aa8e1e-7bf5-4edf-8377-75ea0aa6c20c/RNaseR_LEC_72hpi_R1.R1.trim.fastq -2 /lscratch/61369502/03aa8e1e-7bf5-4edf-8377-75ea0aa6c20c/RNase…
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Dear PBSIM3 maintainers,
I am YU Zhejian from the Zhejiang University-University of Edinburgh Institute. Our group has been using PBSIM1/2/3 to simulate long-read RNA-Seq reads (with [YASIM](https:…
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Dear Sir,
If I have 10 samples (5 vs 5), should I combine all the circRNA ID into list.txt?
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I analyzed 12 sets of paired end reads with CIRI-full pipeline and tried to run CIRI-vis on each of them. 11 samples worked fine but for the 12th sample, CIRI-vis generates the circRNA plots and list …
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**进行该任务需要基本掌握 Linux 操作**。 @JianGuoZhou3
> 问题反馈和交流请联系诗翔 @ShixiangWang 。
>
> 后续跟进实际问题进行补充 QA 和视频交流。
## 1. 准备
1. 获取对应服务器的 CircRNA 账号：目前建国有 2 台服务器已经安装和配置过 circrna-pipeline 流程，使用者根据对应数据存储的服务器，获…