-
Hi there! It would be great to merge the information encoded in the snps.consensus.fa and snps.aligned.fa file, such that both indels and low coverage regions are visible on a consensus sequence. I'm …
-
-
We have had multiple instances where changes to the `sequencer` state machine result in a validator failing to reach consensus with the rest of the nodes after it crashes and goes into a second round …
-
Dear tandem-genotypes developers,
I am using tandem-genoypes v1.8.3 to obtain consensus sequences for the two alleles.
After running the alignment with last, I am running:
```
tandem-genotypes -…
-
Hi,
I would like to request more features for `pxconsq` function in **phyx** :
1. have a flag (or option) that user can choose preferred symbol for gap? Like "-" or "N", or no gap generated …
-
I noticed this consensus sequence:
```
@6 10A0C2T4G0 11A0C4T2G0 15A0C2T4G0 16A0C4T2G0 17A0C2T4G0 18A0C4T2G0 24A0C2T4G0 45A4C0T2G0 46A4C0T0G2 48A1C0T0G5 49A0C4T2G0 56A2C4T0G0 58A5C0T1G0 64A0C1T0G5 66A…
-
https://assets.geneious.com/manual/2020.1/static/GeneiousManualse43.html
Threshold settings
The Threshold determines which base in called in the consensus, and can be set to a percentage, or by us…
-
I have many similar sequences of different lengths and need to get the consensus of them.
From the docs, the seq module should work for this, but any example provided?
-
Hi!
This is not really an issue about the program, but instead of asking via email, I thought perhaps having it here might help someone else, too.
I have a few whole genomes (which are in same coord…
-
Hi,
I love that you have made this tool. installed using conda and I ran this command "TideHunter -u barcode18_test.fastq > units3.fa" and get a file full of the split out subreads/repeats. Howev…