-
I have managed to either corrupt my location files or my index.csv in such a way that this error appears. Unfortunately it is quite unhelpful since one does not know which files are missing or where t…
-
Hi @oursu , thanks for making this repo public!
I am in the process of benchmarking a new metric (see https://github.com/broadinstitute/grit-benchmark) and would like to include eVIP as a compariso…
-
Currently `cytominer_transport/_generator.py` combines objects based on "ImageNumber" and "ObjectNumber".
Instead, we should consider combining objects by their appropriate "Parent_{compartment}" a…
-
(Stubs for now, so we can add this documentation to code later)
Percent strong is reported in two ways. We should distinguish between these ways of reporting (they are similar but not the same)
…
-
### Feature type
- [X] Add new functionality
- [ ] Change existing functionality
### General description of the proposed functionality
Adding commitizen pre-commit hooks will ensure that all comm…
-
@hkhawar and I were troubleshooting cytominer install. It was failing originally because of the issues described in #131 - we are trying to install in a conda environment, but are getting some errors.
-
Since the profiling-recipe was finalized for JUMP the number of people who have interacted with the recipe has dramatically increased (JUMP members and the image analysts). Given that the recipe was a…
-
@Arkkienkeli has produced Cell Painting CNN v1 embeddings for all of JUMP. Currently these are at the single-cell level.
We now need a workflow that does everything downstream.
We will use this…
-
@gwaygenomics You may already know that we sometimes have [had issues](https://github.com/jump-cellpainting/pilot-analysis/issues/15#issuecomment-670640802)(private repo) with `mad_robustize` where on…
-
Are there any QC procedure that could be done prior to aggregating well.
In my case any images that have less cell dense region would create an artifact as the cells become larger and larger. I wan…