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the GlyGen team had a meeting and decided on the next species we would like to add to GlyGen over the next few releases:
* Bovine (2.7)
* Zebrafish / Hamster (2.8)
* Rice (2.9)
The number in par…
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Reported by @Woozl
e.g.
```
curl -X 'POST' \
'https://name-resolution-sri.renci.org/reverse_lookup' \
-H 'accept: application/json' \
-H 'Content-Type: application/json' \
-d '{"cur…
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This was brought up in https://github.com/greenelab/tribe/pull/8, but was proving to be too involved for the scope of the pull request.
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I'm rerunning a pipeline after upgrading STAR to 2.9.4 and getting this error which used not to arise for the identical job.
It is unclear why this might now happen.
There is nothing in recent r…
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We currently only have/use ortholog mappings provided by the [Alliance of Genomes](https://www.alliancegenome.org/), which limits their work to a selection of model organisms. @carlocolantuoni has m…
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I cannot run rMats the normal way so I have run it from a singularity I pulled from [here](https://hub.docker.com/r/mcfonsecalab/rmats). The following variable and command is what I used:
The varia…
yr542 updated
11 months ago
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I've used the latest github version (Dec 14 2020) and my goal is to run ICGS2 clustering. I've created two versions of input counts - one is plain tsv file (called 'tsv' below) and the other a directo…
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hi, I'm confused about the condition here. in the log of funannotate predict, I saw that the the value of 'augustus' is set as 'pasa', while it was set as 'busco' in many other people's logs. I checke…
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I would like to add the following new NCBITaxon to VBO:
NCBITaxon:59729, Taeniopygia guttata (Zebra finch)
NCBITaxon:10036, Mesocricetus auratus (Golden hamster)
NCBITaxon:186623, Actinopteri (…
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Hello,
following this issue:
https://github.com/wheaton5/souporcell/issues/179
minimap is used in souporcell pipeline like:
https://github.com/wheaton5/souporcell/blob/master/souporcell_pipel…