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Hello Chi,
Thank you very much for your kind response by email. I attach the microtable (zip file) and the lines of code that you requested to solve my question.
[LEfSe.zip](https://github.com/C…
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Could be downstream of https://github.com/tidyomics/genomics-todos/issues/1
Work through multi-sample multi-condition differential test using pseudobulked counts, a la a hybrid of `muscat` and `csaw`
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**Describe the bug**
Hi there,
I'm having an issue at the "rownames(seurat_milo)
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Hello @zachary-foster
I attended your workshop at the Phytobiome Conference in Montpellier last December and I managed to realize several comparing heat trees (using a phyloseq object). Again, tha…
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Dear,
I find the ANCOM-BC approach to identify deferentially abundant taxa very interesting and was wondering if the estimated sample-specific offset term could be replaced by a known sampling frac…
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Hi, since the new installation of R and RStudio, I have been unable to run any mixed-model analysis in LinDA. I have tried natively in R and with RStudio with the same result. As long as it's a linear…
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Dear all,
I have generated tables from two analysis modes (sqm_longreads and co-assembly). I have some queries regarding the KO.abund.tsv file:
Are the tables normalized?
If they are not normal…
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Here I will be posting discussion posts that promote computational methods for traversing, reconstructing, and identifying signaling pathways and interaction networks within a biological setting. This…
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The OMA differential abundance analysis chapter currently presents too many methods.
Remove these methods entirely from the chapter:
- LinDA
- ZicoSeq
Also otherwise check if the writing in th…
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A next step for Unipept is adding support for a functional analysis next to the existing taxonomic analysis. While the problem sounds similar to the taxonomic one, there are a few problems:
* Avail…