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Hello,
I have been using VEP V111 to annotated Freebayes VCF files. We have noticed that the ZYG field is missing from the output. Is this expected?
The command line for VEP was:
`qsub -pe …
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https://doi.org/10.1101/433763
> Recent advances in deep learning, particularly unsupervised approaches, have shown promise for furthering our biological knowledge through their application to gen…
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Hi, sorry if I am not supposed to ask such question here, please let me know if there is a designated email or group.
Can you please elaborate on how should I interpret the probability and score g…
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Hello, I download the TF ChIP from ENCODE and rename the narrowbed file as EZH2-ENCFF610BYU.bed. This file was putted into the folder named TFchip, while after I run the following command, the error c…
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Hello dev team,
Thanks for the amazing tool. I would like to understand the TFinfo and Base GRN files a little bit better.
The TF info file looks like this: What are these factors_direct and fa…
momur updated
3 months ago
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Selleri lab has reported these datasets as ready for Hub review.
robes updated
4 years ago
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Hi there,
I ran your code on my own Hi-C data for 3 cell lines (Neural progenitors cell lines, Derived Neurons and Astrocyte glials) using the methodology you describe, but I find a average number…
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**Is your feature request related to a problem? Please describe.**
RefSeqFEs are now available
**Describe the solution you'd like**
We need to be able to map to RefSeqGenes in intergenic (between…
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Hello,
I have defined annotation features - promoter and enhancer lists. I used them with Hi-C data trying to find enhancer-promoter pairs. My Hi-C data ranges were 10kb in size. Later I repeated t…
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Hello,
Super happy with the database that you have put together. This is an awesome resource for researchers.
So from some experiments in my lab I have a list of DMRs from DNA methylation data and…