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# Background
For context, GWAS studies have a unique `study_id` for each analysis. In cases like the UKBB or GWAS catalogue studies with multiple GWASes, the ID is amended with an integer capturing…
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https://hail.is/hail/overview.html#overview-vds
This would well be our storage library.
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# Scratch pad
hs38 primary assembly of GRCh38 (incl. chromosomes, unplaced and unlocalized contigs) and EBV
hs38a hs38 plus ALT contigs
hs38DH hs38a plus decoy contigs and HLA genes (r…
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Hi,
I am trying to run `fastqtl_to_mash.ipynb` script to convert EMBL eQTL catalogue data ([BLUEPRINT dataset](http://ftp.ebi.ac.uk/pub/databases/spot/eQTL/sumstats/BLUEPRINT/ge/)) to MASHR format…
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Dear @mgandal @cjops @cyap7 @danielduyvo @leamhernandez
Thanks for your great data!
These eQTL mapping files in https://www.synapse.org/Synapse:syn51177089 are MAF(minor allele frequency) or …
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Hello,
I'm writing because I have recently trialed dropulation on a couple datasets and have found higher doublet rate estimations than anticipated and want to know if some of the parameters that I…
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Hi SuSiE,
This looks to be a very exciting package, and I'm keen to try it out in the context of GWAS fine-mapping. Thank you for making your work available.
I'm interested if there is any way …
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Hi, I'm user for analyzing sc-eQTL by using tensorQTL.
Thanks for developing great tool to understand SNP's role for bioscience.
I've got problem to analyse sc-eQTL by tensorQTL's cis_independent…
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There may be only few genes in some regions, but the `GIFT_summary` has been running for over three days in these regions.
```
GIFT_summary(Zscore1, Zscore2, LDmatrix1, LDmatrix2, n1, n2, gene, p…
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Dear authors,
I conducted a cis - pQTL mapping on 1000 protein abundance values in four contexts ( two groups x two time-points ) resulting in ~ 4.3 mil cis tests for each context. I ran mashr foll…