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Hi!
I just tried to reinstall the databases which fails in the step
```
curl -o aa_seq_euk.fasta.gz ftp://cegg.unige.ch/OrthoDB8/Eukaryotes/FASTA/aa_seq_euk.fasta.gz
curl: (28) Failed to conn…
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I don't think --miniprot should be a binary parameter or described as output:
https://github.com/galaxyproject/tools-iuc/blob/b21f516390fcbbe3c098266ff0d72e64924aab00/tools/busco/busco.xml#L114
Fr…
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Is there a way to calculate the relative abundance of the eukaryotes from the samples so we can use R library like "phyloseq" to compare the eukaryote diversity across the samples?
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Hi, I have two questions. My sample includes eukaryotes, will it affect the output result?
The phage genome I am concerned about is 50-200kb in size.，Will the screening conditions “--min-length 3000”…
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I'm looking for a method that can say whether an assembly is prokaryotic or eukaryotic. Was thinking this software might be helpful. Do you have any preconfigured databases that have both prokaryote…
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1. On bioRxiv：
[De novo mutation rates in sticklebacks](https://www.biorxiv.org/content/10.1101/2023.03.16.532904v1)
2. Question
Mutation rate of Clupea harengus is 2.0 × 10-9 per base per gene…
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I ran hifiasm-meta HiFi reads from rumen microbiome and the contigs were generated from various bacterial and eukaryotes.
I am wondering if I can find out the coverage of each contigs.
Is there any …
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to add to course.
[Parallel to the discussion. Structure and characteristics of genomes (prokaryotes, eukaryotes) that are important for bioinformatics. ie. DNA structure general, gene structure and…
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Holes remain in the queuine/queuosine pathways in eukaryotic organisms. While QTRT1 and QTRT2 are relatively well understood in their roles across many model eukaryotes, other biochemistries are recog…
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In soil ecology, some organisms feeding on microorganisms are also considered as predators.
I suggest moving predator as a subclass of heterotroph, and maybe adding 'animal predator' as both a subcla…