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Trying to run FastQC for my bz2-compressed file
`fastqc 08asp.fastq.bz2` - I get the following error:
> Started analysis of 08asp.fastq.bz2
> Failed to process file 08asp.fastq.bz2
> uk.ac.babraha…
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# Issue Report
## Please describe the issue:
I am working on epigenetic analysis for bacterial samples using Oxford Nanopore sequencing (FLO-MIN114), and I’m transitioning from Tombo to Dorado for…
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Hi,
Thanks for the useful package you provided, I m trying to repeat your analysis on testdata so then I will use scFusion on my single cell RNA-seq ALL dataset to find fusion genes. I have an issu…
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### Description of the bug
I just want to use the pipeline for QC'ing my nanopore data, but it prematurely terminates after the initial step of the pipeline:
```bash
[70/93224f] process > NFCOR…
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I installed following the directions here https://github.com/pinellolab/CRISPResso2/discussions/158. I downloaded the base pair example file and ran the command provided from examples but I am getting…
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Hello
I had trouble with uploading my read files in a sever to do Bismark analysis cause they are so big (about 20 G). I compressed them with winRar and I want to run Bismark alignment. Can I ran Bi…
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Hi, I was running fastqc on my computer and there is more than 200G left. I also run ulimit -c unlimited. But this problem still exists.
fastqc Jag1-6_S6_L001_R1_001.fastq.gz --dir ./
applic…
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Hi developer,
Very cool tool!
I was trying to adapter this tool to my data, i installed it and run with my test data.
i got an error like:
```bash
ERROR: unequal read number for read1 (3276…
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I performed buttery-eel basecalling on the slow5 file and got the fastq file. I want to detect m6A modification. Can I extract information from the slow5 file and the resulting fastq file to build a m…
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Hello, I have a few questions and observations about the behaviour of the --revcomb flag for when cutting off primers from paired-end data.
1. Using a single-read approach on F and R files separate…