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**Hi,
I've been trying to run the nhp-abcd-bids-pipeline for surface reconstruction using Macaque MR images. I have both T1w and T2w images. I have validated the BIDS file structure using the bids…
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as of 0.4a57
sample code:
```python
import siibra
p = siibra.parcellations["julich brain 2.9"]
type(p.get_map("fsaverage", "labelled").fetch()) # returns
type(p.get_map("mni152", "labelle…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Operating system
- [X] Linux
- [ ] Mac
- [ ] Windows
### Operating system version
NAME="Rocky Linux"
VERSIO…
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Came up for HCP .spec files use case -- inputs/outputs might already be specified in the .spec file. Giving that .spec to wb_command for actual transformation. The question -- how could we have some…
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When supported spaces of parcellations julich 2.9 and 2.5 are asked, siibra (refactor_v0.4a25) does not list BigBrain.
```python
import siibra
[s.name for s in siibra.parcellations["2.9"].supported…
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### What went wrong?
Got a 404 on URL for a previously working file (couple weeks ago I think? no changes at our end AFAIK) from graphql.
### Expected behavior
Not a 404 :slightly_smiling_face:
…
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### What would you like to see added in fMRIPrep?
I was reading [Jeganathan et al. (preprint)](https://doi.org/10.1101/2024.07.09.602799), and it seems like the `onavg` surface space would be prefe…
tsalo updated
1 month ago
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If #165 works, then the gridsearch _does not need to be run to the hexels on the media wall_.
In particular:
- remove the fsaverage medial wall hexels from the search after averating and before …
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Use nearest neighbours interpolation and gifti file format. This should be available for the fsnative and fsaverage.
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https://github.com/tknapen/nsd_access/blob/ffa837a001de2b7230ece6750c168a59a146b021/nsd_access/nsda.py#L220
@tknapen we have a bug with the mgz.ctab files not being read by pd.read_csv at the line …