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Currently we merge PAINT files during the GOC release pipeline. This has the advantage that we do not need to wait for all groups to incorporate into their source database before the public sees them.…
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This issue was raised by @Feat-FeAR :
The internal annotations for human chips do not have linked scripts for re-generation. Additionally, there are other considerations to make:
- Many Agilent micro…
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As demostrated below:
```
hs3163@node57:/mnt/vast/hpc/csg/snuc_pseudo_bulk/eight_celltypes_analysis$ cat /mnt/vast/hpc/csg/snuc_pseudo_bulk/eight_celltypes_analysis/8_celltypes_script_3 | grep sos …
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I was trying to run the command using:
`python3 collapse_annotation.py gencode.vM25.annotation.gtf gencode.vM25.genes.gtf `
I used anacondas environment to use python3, and use gencode.vM25.annot…
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Hello, everyone
I used the PASA (v2.5.3) pipeline to update the annotations from EVM with the following command: `/vol2/YL_group/YL/software/PASApipeline-master/Launch_PASA_pipeline.pl -c alignAssemb…
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### Description of feature
The pipeline should also be able to predict putative Neo-epitopes based on structural variants (SV). Currently we only support SNVs and small indels. Predicting Neo-epitope…
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To run enrichment, I made a metadata table, but I always encounter keyerror problems. Could you tell me the correct metadata table template? thanks
here is the error"
[2023-12-27 15:12:16 PM] INFO: …
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Hi,
Maybe I'm getting this totally wrong, but from the README file it seems that to annotate regulatory regions for each gene or region, you can either use a motif annotation generated by cluster-b…
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### Operating System
Other Linux (please specify below)
### Other Linux
Red Hat Enterprise Linux release 8.6
### Workflow Version
v1.1.1-g999fb4e
### Workflow Execution
Command li…
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In semi-model organisms, NCBI and Ensembl usually provide annotations based on ab initio gene prediction and orthology based evidence. With cheap RNAseq, we can build RNA based gene models using Cuffl…