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From the vignette and by running the SCnorm command on 10x data that is heavily zero-inflated (sequenced to 85-90% saturation), i ran into the
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I am testing different breeding strategies (mass selection, pedigree, genomic selection), and I would like to obtain inbreeding levels for each selection round and genetic gain. I am new to using Alph…
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Hi,
I am attempting to annotate a customized VCF file using NCBI's GFF and (fna) FASTA files for the Newcastle disease virus (https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_004786615.1/). However, …
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ISARIC Core CRF captures serology or genomic results indicating the type of pathogen. For example Influenza A/H3N2, Dengue DENV1, Hepatitis type B. WHO T0 form indicates collection of pathogenic agent…
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I want to convert 10x Genomics single cell data to AIRR format. Is it possible?
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Download the glycan and protein datasets in preparation of pre-processing.
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Hi,
I am trying to analyse raw 10X genomics sequence data on it, using the following code on HPC cluster but it is keep giving me an error and it seems it stops
-R1 SC98_R1_001.fastq.gz
-R2 SC98R2_…
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@09012000-tosca
-- **data owner**: EMBRC or the station or EMO BON?
According to [EMOBON’s Data Management Plan](https://www.embrc.eu/sites/default/files/publications/EMO_BON_Data_Management_Plan…
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Dear authors,
I have read with interest the preprint that links to this Github repo, "Trajectory inference from single-cell genomics data with a process time model".
The preprint mentions the "…
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When using RefSeq merged cache for GRCh37, VEP returns outdated symbols of some genes, even though the same genes are reported with the updatd symbol in RefSeq GFF.
For instance, genes IKBKAP and D…