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I am running a gwas analysis in chromosome X on a topmed imputed dataset in ukbiobank and I am getting this error.
 and study index (#3357), we would like to serve a `credible_set` dataset through OS + API.
This dataset is created by different upstream ETL processes (…
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Old OTG platform in colocalisation page there is a study beta:
https://genetics-docs.opentargets.org/faqs#why-are-betas-and-odds-ratios-displayed-inconsistently-in-the-portal
```
On the other hand, w…
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Data associated with this project https://www.medrxiv.org/content/10.1101/2023.12.06.23299426v1 has been shared with Open Targets and needs ingesting into the GWAS Catalog. The data is presented in se…
ljwh2 updated
20 hours ago
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Some OpenGWAS datasets don't show any data links on their website, I think because they're restricted use (at least currently). e.g. https://gwas.mrcieu.ac.uk/datasets/finn-b-G6_ALZHEIMER/
Currentl…
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I saw this when running a long job that writes Zarr archives on GS:
```
Traceback (most recent call last):
File "scripts/gwas.py", line 420, in
fire.Fire()
File "/home/eczech/repos/ukb…
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It is time to discuss the genome-wide significant p-value threshold for GWAS and molQTL studies. We started this discussion with @Daniel-Considine and @d0choa.
## Background
For now, we use the …
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Hi, I'm getting an error in the multiqc step of the workflow when running it with the ecoli test dataset.
Here's a snippet of the error:
```
Error in rule multiqc:
jobid: 1
input: re…
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Hi,
Thanks for this wonderful tool!
I am running a genetic correlation between brain volume (**C256_55**) and AD. I obtained very low h2 estimates for this brain volume (I ran GWAS with) and al…
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New term requested: training use.
From H3Africa feedback:
> This data use category indicates that use is allowed for training purposes.
Per @nmulder
> Sometimes we look for datasets that can b…