-
In a comparison of metagenomic assemblies made only from illumina short-read data (metaSPADES) to hifiasm-meta assemblies (the primary contig file, .p_ctg.gfa), we found an ARG assembled in a metaSPAD…
-
Dear autor:
I am assembling a plant genome, and now it is assembled to the level without gap. It have 21 chromosomes, but so far only 39 have been counted, and there are 3 motifs (AAACCCT) w…
-
[hifiasm.log](https://github.com/user-attachments/files/16048080/hifiasm.log)
how to fix it!
-
Was there the mature manner to integrate this tools into assembly pipeline like hifiasm or canu? It seems that no alignment files are ever generated intermediatly during the assembly by hifiasm.
-
Hi,
Thanks for developing this useful tool. I assembled two haplotypes from a diploid plant using the hifiasm tool with HiFi and HiC data. Now, I use HiC data to anchor two haplotypes. You mentioned …
-
Hi!
First, thanks for the great tool! :)
I am assembling two different genomes - the human genome and the durian (fruit) genome.
For human genome I have around 48x pacbio hifi data and around …
-
Hello,
I'm using Hifiasm v0.19 to construct my assemblies based on PacBio Hifi and ONT data using following command:
hifiasm -o ${path}/${ID}_hifiasm_0.19_purged.asm -t 45 --ul ${ONT_data} ${Hifi_…
-
Hello,
I am working on plant species which is highly heterozygous and shows chromosomal aneuploidy. We have both 25× HiFi data and 50× HiC. Is it possible to generate a complete phased assembly u…
-
Hello, @chhylp123
I have used Hifiasm combined with the Hi-C technology to assembly one male mammal genome, this great software is fast and high-efficiency, but I have some questions about the hap…
-
Hi,
I trying to assemble metagenomics hifi reads. Is Hifiasm suited for metagenomics assembly? and if so do you have any recommended settings for that purpose?
Best,
Jean