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This would be similar to `cellxgene_census.get_anndata` and reduce the amount of code users have to write.
**Current**
```
human = census["census_data"]["homo_sapiens"]
query = human.axis_query(…
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Hi,
When I running this command :
`vcf2maf=/data/jiaf/wes_cancer/biosoft/vcf2maf/vcf2maf.pl
vep_path=~/miniconda3/envs/vep/bin/
GENOME=/data/jiaf/wes_cancer/biosoft/gsutil/gatk/hg19/v0/Homo_sapie…
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I found this problem when I was writing test cases for `sea-orm` based on `gluesql`.
Steps to reproduce:
- Create some table that use UUID as the primary key's type.
- Insert an item.
- Try to…
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### Description of the bug
I know it is still work in progress, but the new version of this pipeline `https://github.com/nf-core/rnavar/tree/dev` seems really promising. However, it only takes the fi…
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Folks occasionally but consistently ask for this information on the forum and our current answer is that we provide these files as is. For the new GATK4 documentation, which we plan on releasing on Ja…
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Dear fusion catchers,
While building the indexes for fusion catcher we stumbled upon an issue that may be derived from a change in the FTP structure that break some assumptions.
When the organ…
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**What is your question?**
@eblerjana I am working on reconstructing a haploid haplotype using the imputed genotypes from PanGenie. Currently, I am using the following commands:
```bash
PanGenie …
gsc74 updated
1 month ago
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See https://github.com/auerbachs/BMDExpress-2/wiki/Additional-Information#supported-microarrays
Current list should be:
|ID |…
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**Describe the bug**
`Illegal instruction (core dumped)` errors when trying to view any alignments with the same args (`$ gw -b input.bam refs.fasta -r "$ACCESSION"`) as used with gw v1.0.0.
**T…
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## Describe the issue
vep give different result when using multi-thread(--fork).
problem:
Some gene(like ENSG00000169047 or ENSG00000168769) will loss its refseq HGNC ID(near field EntrezGene) wh…