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Hello dear developers,
I am writing to ask you for some advice regarding the usage of your tool.
As of today, I've run a few tests on different viral genomes to test the tool, but I've always bump…
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Challenge pages on https://dreamchallenges.org have [buttons to share challenges on popular social platforms](https://dreamchallenges.org/dream-4-in-silico-network-challenge/). For example:
Faceboo…
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Multithreading calculation for writing the dense matrix.
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[09_08_2024 11_55_00.txt](https://github.com/user-attachments/files/16948724/09_08_2024.11_55_00.txt)
Dear Vadim,
I was analyzing 48 files with DIANN 1.8.1. DIANN exited while it was analyzing …
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@anneodonnell commented on [Wed Jun 26 2019](https://github.com/broadinstitute/seqr/issues/924)
pext scores are Beryl's transcript aware expression score. I was hoping it could be added to the in sil…
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Hi,
I'm relatively new to bioinformatics and microbiology, and I've been following the DADA2 tutorial to process my 16S gDNA & eDNA sequencing data. After merging my paired reads and constructing …
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**Summary !!!**
- **BioModel Name**: Chi2019 - In Silico Prediction of PAMPA Effective Permeability Using a Two-QSAR Approach
- **BioModel Tag**: Machine learning model, Ersilia
- **Metadata …
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I am using the code you developed for STAC. Using the results coming from the friedman test, I get the following error when trying to run the
holm_multitest:
Traceback (most recent call last):
…
ghost updated
7 years ago
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When exploring the cross validation tables (50 iteration table) - specifically TP53 BRCA - I found a mutation that is not annotated with any of the consequence type we expect:
| chr | pos | ref | a…
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Some features used in genark/UCSC track hubs
chromAlias.bb (bigbed format refNameAliases)
defaultLocation
html links
bpt file
blat server
isPcr (in silico pcr)
etc.