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I processed Pacbio full-length 16S sequencing data using DaDa2 v1.30.0
Followed the tutorial all the way to the use dada command to process the de-duplicated data
such as "dd
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Hello,
I am currently trying to run finder on three whole genome samples:
1. Sequenced with Illumina HiSeq x ten
2. Sequenced with Illumina Novaseq 6000
3. Sequenced with PacBio SMRT
Samples…
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Hi,
Thanks for the useful variant calling tool for long-read RNA sequencing data. Since the entire tool and the evaluation process are developed in R language, it may be difficult for users who a…
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Hi,
I am quite new to the field of metagenomic sequencing and we are starting a new project in our lab and want to use your pipeline to determine if some sub-strains emerge or abolish over time. Or…
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Is there already any implemented function to encode longer sequences (such as sequencing reads) using their k-mers embeddings?
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Hi,
Is this method is optimised for detecting cDNA from (pacbio) long-reads based whole genome sequencing?
Thanks.
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### Enzyme, ADAR (proof-read and correct mistakes in RNA)
[**ADAR editing enzymes** are found in all multicellular animals and are conserved in sequence and protein organization. The number of ADAR g…
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**Describe the bug**
UMI-Tools does not remove all duplicate reads. This can be verified by running UMI-Tools on it's own output, which removes additional reads.
**To Reproduce**
Take any bam fil…
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I have a question about internal timing of masurca. Does masurca trim adaptors from long read sequencing data set (ONT/PacBio)?
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Here I talk about the sequencing data used in the tutorial. I guess is this an okay way to do this?
https://github.com/jordenrabasco/Long_read_processing_tutorial/blob/59cd38e50e19a140fe7e0495169ad…